Fabrizzio Mc Manus

This paper addresses the general problem of how to rationally choose an algorithm for phylogenetic inference. Specifically, the controversy between maximum likelihood (ML) and maximum parsimony (MP) perspectives is reframed within the philosophical issue of theory choice. A Kuhnian approach in which rationality is bounded and value-laden is offered and construed through the notion of a Style of Modeling. A Style is divided into four stages: collecting remnant models, constructing models of taxonomical identity, implementing modeling algorithms, and finally inferring and confirming evolutionary trees or cladograms. The identification and investigation of styles is useful for exploring sociological and epistemological issues such as individuating scientific communities and assessing the rationality of algorithm choice. Regarding the last point, this paper suggests that the values motivating ML and MP perspectives are justified but only contextually; these algorithms also have normative force because they can be therapeutic by allowing us to rationally choose among several competing trees, nonetheless this force is limited and cannot be used in order to decide the controversy tout court.

The aim of this paper is to revisit an ongoing controversy within the so called “Science Wars”; more specifically, I will address a particular topic within the “human nature” debate: the ontological and epistemological status of homosexuality. I claim that, in this particular chapter of the “Science Wars”, we are continually left in an explanatory impasse even when more data are collected, more rigorous experimental techniques are developed, more subtle arguments are offered and more pluralistic narratives are told. My diagnosis of the source of this impasse leads me to the conclusion that here we are dealing with a structural problem that cannot be solved with an elaboration of new models and theories that maintain an on- tology and an epistemology that are no longer suited as an explanans of human nature in general, and homosexuality in particular. Nevertheless, my analysis of the structural features of the biological explanations and the constructivist counter-explanations also leads me to the belief that, although biologists do not fully understand the intricacies of subjects, neither constructivists understand the facticity of evolution and the challenge that it implies. If so, then the subject might be the right target of explanation. And, if so, constructivists might be right about the uniqueness of human homosexuality as a modern, western phenomenon explainable in terms of subjectivities and identities that mold and are molded by desires and institutions. But, if they are, evolution is not expendable because now we are facing a most intriguing question: How is that we humans became subjects?

This paper addresses the general problem of how to rationally choose an algorithm for phylogenetic inference. Specifically, the controversy between maximum likelihood (ML) and maximum parsimony (MP) perspectives is reframed within the philosophical issue of theory choice. A Kuhnian approach in which rationality is bounded and value-laden is offered and construed through the notion of a Style of Modeling. A Style is divided into four stages: collecting remnant models, constructing models of taxonomical identity, implementing modeling algorithms, and finally inferring and confirming evolutionary trees or cladograms. The identification and investigation of styles is useful for exploring sociological and epistemological issues such as individuating scientific communities and assessing the rationality of algorithm choice. Regarding the last point, this paper suggests that the values motivating ML and MP perspectives are justified but only contextually; these algorithms also have normative force because they can be therapeutic by allowing us to rationally choose among several competing trees, nonetheless this force is limited and cannot be used in order to decide the controversy tout court.

Este texto busca generar un espacio de interlocución entre filósofos de la biología y estudiosos del género. En el marco del feminismo analítico ofrece dos ejemplos concretos que buscan ilustrar la fecundidad de dicho encuentro. Por un lado, se examina la acusación de esencialismo que generalmente se esgrime en contra de la biología y se le replantea a la luz de la filosofía de la taxonomía. Por otro lado, se analiza la estructura de las explicaciones biológicas del género y la sexualidad a la luz de las llamadas falacias ontogenética y filogenética.