•  150
    CIDO: The Community-Based Coronavirus Infectious Disease Ontology
    with Yongqun He, Hong Yu, Edison Ong, Yingtong Liu, Anthony Huffman, Hsin-hui Huang, Beverley John, Asiyah Yu Lin, Duncan William D., Sivaram Arabandi, Jiangan Xie, Junguk Hur, Xiaolin Yang, Luonan Chen, Gilbert S. Omenn, Brian Athey, and Barry Smith
    Proceedings of the 11th International Conference on Biomedical Ontologies (ICBO) and 10th Workshop on Ontologies and Data in Life Sciences (ODLS). 2021.
    Current COVID-19 pandemic and previous SARS/MERS outbreaks have caused a series of major crises to global public health. We must integrate the large and exponentially growing amount of heterogeneous coronavirus data to better understand coronaviruses and associated disease mechanisms, in the interest of developing effective and safe vaccines and drugs. Ontologies have emerged to play an important role in standard knowledge and data representation, integration, sharing, and analysis. We have init…Read more
  •  48
    A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology
    with Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale, John Beverley, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Philip Huang, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng, Anna Maria Masci, Liwei Wang, Hongfang Liu, Fatima Zohra Smaili, Robert Hoehndorf, Zoë May Pendlington, Paola Roncaglia, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur, Gilbert S. Omenn, Brian Athey, and Barry Smith
    Journal of Biomedical Semantics 13 (1): 25. 2022.
    The current COVID-19 pandemic and the previous SARS/MERS outbreaks of 2003 and 2012 have resulted in a series of major global public health crises. We argue that in the interest of developing effective and safe vaccines and drugs and to better understand coronaviruses and associated disease mechenisms it is necessary to integrate the large and exponentially growing body of heterogeneous coronavirus data. Ontologies play an important role in standard-based knowledge and data representation, integ…Read more
  •  47
    A new framework for host-pathogen interaction research
    with Hong Yu, Li Li, Anthony Huffman, John Beverley, Junguk Hur, Eric Merrell, Hsin-hui Huang, Yingtong Liu, Edison Ong, Liang Cheng, Tao Zeng, Jingsong Zhang, Pengpai Li, Zhiping Liu, Zhigang Wang, Xiangyan Zhang, Xianwei Ye, Samuel K. Handelman, Jonathan Sexton, Kathryn Eaton, Gerry Higgins, Gilbert S. Omenn, Brian Athey, Barry Smith, Luonan Chen, and Yongqun He
    Frontiers in Immunology 13. 2022.
    COVID-19 often manifests with different outcomes in different patients, highlighting the complexity of the host-pathogen interactions involved in manifestations of the disease at the molecular and cellular levels. In this paper, we propose a set of postulates and a framework for systematically understanding complex molecular host-pathogen interaction networks. Specifically, we first propose four host-pathogen interaction (HPI) postulates as the basis for understanding molecular and cellular host…Read more
  •  13
    Preparing Workplaces for Digital Transformation: An Integrative Review and Framework of Multi-Level Factors
    with Brigid Trenerry, Samuel Chng, Zainal Shah Suhaila, Sun Sun Lim, Han Yu Lu, and Peng Ho Oh
    Frontiers in Psychology 12. 2021.
    The rapid advancement of new digital technologies, such as smart technology, artificial intelligence (AI) and automation, robotics, cloud computing, and the Internet of Things (IoT), is fundamentally changing the nature of work and increasing concerns about the future of jobs and organizations. To keep pace with rapid disruption, companies need to update and transform business models to remain competitive. Meanwhile, the growth of advanced technologies is changing the types of skills and compete…Read more
  •  9
    Indications of bulk property changes from surface ion implantation
    with B. Yang, N. Can, and P. D. Townsend
    Philosophical Magazine 91 (2): 250-262. 2011.
  •  6
    Dynamic Analysis and Robust Control of a Chaotic System with Hidden Attractor
    with Huaigu Tian, Zhen Wang, Peijun Zhang, and Mingshu Chen
    Complexity 2021 1-11. 2021.
    In this paper, a 3D jerk chaotic system with hidden attractor was explored, and the dissipativity, equilibrium, and stability of this system were investigated. The attractor types, Lyapunov exponents, and Poincare section of the system under different parameters were analyzed. Additionally, a circuit was carried out, and a good similarity between the circuit experimental results and the theoretical analysis testifies the feasibility and practicality of the original system. Furthermore, a robust …Read more
  •  5
    Space-Focused Stereotypes About People Living With HIV/AIDS and the Effects on Community-Approaching Willingness
    with Fangfang Wen, Bin Zuo, Jian Yang, Yalan Qiao, Hanxue Ye, and Zengqi Luo
    Frontiers in Psychology 13. 2022.
    Targeting people living with Human Immunodeficiency Virus, this research examined the prevalence of space-focused stereotypes and their underlying mechanism on behavioral inclinations. Study 1 adopted the explicit nomination and implicit Go/No-Go association tests to explore the existence of space-focused stereotypes of people living with HIV/AIDS. The results demonstrated that space-focused stereotypes were only manifested explicitly with characteristics such as messy, dirty, and gloomy. Study …Read more
  •  5
    Icing on the Cake: “Amplification Effect” of Innovative Information Form in News Reports About COVID-19
    with Fangfang Wen, Hanxue Ye, Yian Xu, and Bin Zuo
    Frontiers in Psychology 12. 2021.
    In the information era, the instant and diversified broadcasting of the COVID-19 pandemic has played an important role in stabilizing the societal mental state and avoiding inter-group conflicts. The presentation of visual graphics was considered as an innovative information form and broadly utilized in news reports. However, its effects on the audiences' cognition and behaviors have received little empirical attention. The current study applied real-time and retrospective priming paradigms to e…Read more
  •  4
    Our current work seeks to provide direct empirical evidence on whether Chinese international students’ experiences studying abroad promote dialectical thinking. We collected behavioral data from 258 Chinese international students studying in multiple regions. We found that there was a main effect among the four conditions. More specifically, when primed with studying abroad or typical day, participants were more likely to show tolerance for contradiction by deeming both sides of contradictory sc…Read more
  •  4
    Bayesian feature interaction selection for factorization machines
    with Yifan Chen, Pengjie Ren, Meng Wang, and Maarten de Rijke
    Artificial Intelligence 302 (C): 103589. 2022.
  •  4
    Robust Fixed-Time Inverse Dynamic Control for Uncertain Robot Manipulator System
    with Mingshu Chen and Yu Song
    Complexity 2021 1-12. 2021.
    This paper proposes a novel robust fixed-time control for the robot manipulator system with uncertainties. Based on the uniform robust exact differentiator algorithm, a robust control term is constructed. Then, a robust fixed-time inverse dynamics control is proposed. For the proposed control method, the fixed-time stability of a closed-loop system with uncertainties is strictly proved. The newly proposed method exhibits the following two attractive features. First, the proposed control scheme e…Read more
  •  4
    For synchronization of a class of chaotic systems in the presence of nonvanishing uncertainties, a novel time-varying gain observer-based sliding mode control is proposed. First, a novel time-varying gain disturbance observer is developed to estimate the uncertainties. Then, by using the output of TVGDO to modify sliding mode control, a new TVGDO-based SMC scheme is developed. Although the observation and control precision of conventional fixed gain disturbance observer-based control for chaotic…Read more
  •  3
    As the most frequently used tool for measuring empathy, the Interpersonal Reactivity Index (IRI) is often scored by researchers arbitrarily and casually. Many commonly used IRI scoring approaches and their corresponding measurement models are unverified, which may make the conclusions of subsequent variable relation studies controversial and even misleading. We make the first effort to summarize these measurement models and to evaluate rationality of the common scoring methods of the IRI by conf…Read more
  •  3
    Dynamic Analysis and Degenerate Hopf Bifurcation-Based Feedback Control of a Conservative Chaotic System and Its Circuit Simulation
    with Xiaojuan Zhang, Mingshu Chen, Huaigu Tian, and Zhen Wang
    Complexity 2021 1-15. 2021.
    A novel conservative chaotic system with no equilibrium is investigated in this study. Various dynamics such as the conservativeness, coexistence, symmetry, and invariance are presented. Furthermore, a partial-state feedback control scheme is proposed, and the stable domain of control parameters is analyzed based on the degenerate Hopf bifurcation. In order to verify the numerical simulation analysis, an analog circuit is designed. The simulation results show that the output of the analog circui…Read more
  •  2
    Link Prediction Model for Weighted Networks Based on Evidence Theory and the Influence of Common Neighbours
    with Miaomiao Liu, Jing Chen, and Yongsheng Zhang
    Complexity 2022 1-16. 2022.
    A link prediction model for weighted networks based on Dempster–Shafer evidence theory and the influence of common neighbours is proposed in this paper. First, three types of future common neighbours and their topological structures are proposed. Second, the concepts of endpoint weight influence, link weight influence, and high-strength node influence are introduced. Then, the similarity based on the impacts of current common neighbours and FCNs is defined, respectively. Finally, the two similar…Read more
  •  2
    Understanding the role of teachers’ facial expressions in students’ learning is helpful to improve online teaching. Therefore, this study explored the effects of teacher’s facial expressions on students’ learning through analyzing three groups of video lectures. Participants were 78 students enrolled in three groups: one with an enhanced-expression teacher, one with a conventional-expression teacher, and one with the teacher’s audio only. ANOVA was used to explore whether video lectures instruct…Read more
  • Lun li jie gou, zun bei yu she hui sheng chan
    Zhongguo jing ji chu ban she. 2011.