John S. Wilkins

Creationism is usually regarded as an irrational set of beliefs. In this paper I propose that the best way to understand why individual learners settle on any mature set of beliefs is to see that as the developmental outcome of a series of “fast and frugal” boundedly rational inferences rather than as a rejection of reason. This applies to those whose views are opposed to science in general. A bounded rationality model of belief choices both serves to explain the fact that folk traditions tend to converge on “anti-modernity”, and to act as a default hypothesis, deviations from which we can use to identify other, arational, influences such as social psychological, economic and individual dispositions. I propose some educational and public policy strategies that might decrease the proportion of learners who find creationism and anti-science in general a rational choice.

An oft-repeated claim is that there is information in some biological entity or process, most especially in genes. Some of these claims derive from the Central Dogma, population genetics, and the neo-Darwinian program. Others derive from attacks upon evolution, in an attempt to show that “information cannot be created” by natural selection. In this paper I will try to show that the term “information” is a homonym for a range of distinct notions, and that these notions are either of concrete properties, in which case they are little more than a periphrasis for correlation and causation, or of abstract properties, in which case they are observer-dependent. In short, if information is in the concrete world, it is causality. If it is abstract, it is in the head.

The vision of natural kinds that is most common in the modern philosophy of biology, particularly with respect to the question whether species and other taxa are natural kinds, is based on a revision of the notion by Mill in A System of Logic. However, there was another conception that Whewell had previously captured well, which taxonomists have always employed, of kinds as being types that need not have necessary and sufficient characters and properties, or essences. These competing views employ different approaches to scientific methodologies: Mill’s class-kinds are not formed by induction but by deduction, while Whewell’s type-kinds are inductive. More recently, phylogenetic kinds (clades, or monophyletic-kinds) are inductively projectible, and escape Mill’s strictures. Mill’s version represents a shift in the notions of kinds from the biological to the physical sciences.

Species, or ‘the Species Problem’, is a topic in science, in the philosophy of science, and in general philosophy. There is not one, but many, species problems, and these are dealt with in this volume. Species are often thought of as units of biology, to be used in ecology, conservation, classification, and theory. The chapters in this book present opposing views on the current philosophical and conceptual issues of the Species Problem in biology. Divided into four sections Theories and Concepts, Practice and Methods, Ranks, Trees and Names, and Metaphysics and Epistemologies, the book is authored by systematists, philosophers, historians and working biologists, many leaders in their fields. Topics include Essentialism and individuals, speciation modes, theory and the species rank, nomenclature and diagnosis, scale of species, and ecology, conservation, and species. Species Problems and Beyond aims to clarify the contemporary issues of the Species Problem. It is ideal for use in upper-level seminars and courses in Evolutionary Biology, Philosophy of Science, Philosophy of Biology, Systematics and Taxonomy, and Phylogenetics/Cladistics, and for any scholar in these fields.

In 1988, David Hull presented an evolutionary account of science. This was a direct analogy to evolutionary accounts of biological adaptation, and part of a generalized view of Darwinian selection accounts that he based upon the Universal Darwinism of Richard Dawkins. Criticisms of this view were made by, among others, Kim Sterelny, which led to it gaining only limited acceptance. Some of these criticisms are, I will argue, no longer valid in the light of developments in the formal modeling of evolution, in particular that of Sergey Gavrilets’ work on adaptive landscapes. If we can usefully recast the Hullian view of science as being driven by selection in terms of Gavrilets’ and Kaufmann’s view of there being “giant components” of high-fitness networks through any realistic adaptive landscape, we may now find it useful to ask what the adaptive pressures on science are, and to extend the metaphor into a full analogy. This is in effect to reconcile the Fisherianism of the Dawkins–Hull approach to selection and replicators, with a Wrightean drift account of social constructionist views of science, preserving, it is to be hoped, the valuable aspects of both.

Arguments against essentialism in biology rely strongly on a claim that modern biology abandoned Aristotle's notion of a species as a class of necessary and sufficient properties. However, neither his theory of essentialism, nor his logical definition of species and genus (eidos and genos) play much of a role in biological research and taxonomy, including his own. The objections to natural kinds thinking by early twentieth century biologists wrestling with the new genetics overlooked the fact that species have typical developmental cycles and most have a large shared genetic component. These are the "what-it-is-to-be" members of that species. An intrinsic biological essentialism does not commit us to Aristotelian notions, nor even modern notions, of essence. There is a long-standing definition of "species" and its precursor notions that goes back to the Greeks, and which Darwin and pretty well all biologists since him share, that I call the Generative Conception of Species. It relies on there being a shared generative power that makes progeny resemble parents. The "what-it-is-to-be" a member of that species is that developmental type, mistakes in development notwithstanding. Moreover, such "essences" have always been understood to include deviations from the type. Finally, I shall examine some implications of the collapse of the narrative about essences in biology.

Species concepts for bacteria and other microbes are contentious, because they are often asexual. There is a Problem of Homogeneity: every mutation in an asexual lineage forms a new strain, of which all descendents are clones until a new mutation occurs. We should expect that asexual organisms would form a smear or continuum. What causes the internal homogeneity of asexual lineages, if they are in fact homogeneous? Is there a natural “species concept” for “microbes”? Two main concepts devised for metazoans and metaphytes have been applied to bacteria. One is the Recombination Concept, a revised form of the Biological Species Concept in which the homogenizing mechanism is the sharing of genome fragments, somewhat akin to sexual recombination. The other is the Ecological Species Concept, in which the ecological niche is that which maintains lineages as cohesive. In this paper I will discuss these two concepts, and offer an underlying model that conjoins them, and consider the implications for species concepts in general. In short, my argument is that asexual species are instances of the most primitive and underived notion of species, which I will call “quasispecies”, following Eigen, and that sexual species are merely one derived kind of species. Moreover, I will argue that there is a continuum of recombination from simple viral models in which each strain is a clone, through to obligate recombination of 50% of the parents’ genome, and that consequently there is no sharp division between “microbial” and more familiar species.

It is often claimed there is information in some biological entity or process, most especially in genes. Genetic “information” refers to distinct notions, either of concrete properties of molecular bonds and catalysis, in which case it is little more than a periphrasis for correlation and causal relations between physical biological objects (molecules), or of abstract properties, in which case it is mind-dependent. When information plays a causal role, nothing is added to the account by calling it “information”. In short, if genetic information is concrete, it is causality. If it is abstract, it is in the head.

David Hull's (1988c) model of science as a selection process suffers from a two-fold inability: (a) to ascertain when a lineage of theories has been established; i.e., when theories are descendants of older theories or are novelties, and what counts as a distinct lineage; and (b) to specify what the scientific analogue is of genotype and phenotype. This paper seeks to clarify these issues and to propose an abstract model of theories analogous to particulate genetic structure, in order to reconstruct relationships of descent and identity.

Few problems in the philosophy of evolutionary biology are more widely disseminated and discussed than the charge of Darwinian evolution being a tautology. The history is long and complex, and the issues are many, and despite the problem routinely being dismissed as an introductory-level issue, based on misunderstandings of evolution, it seems that few agree on what exactly these misunderstandings consist of. In this paper, I will try to comprehensively review the history and the issues. Then, I will try to present the following “solution”, or, one might say, “dissolution”, of the problem, and consider the wider implications of formal, or schematic, explanations in science: yes, the principle of natural selection is a tautology, and so what? It is a promissory note for actual, physical, explanations in particular cases, and is none the worse for that. This is not a new argument, of course, but it does point up the importance of formal schematic models in science.

Speciation is an aspect of evolutionary biology that has received little philosophical attention apart from articles mainly by biologists such as Mayr (1988). The role of speciation as a terminus a quo for the individuality of species or in the context of punctuated equilibrium theory has been discussed, but not the nature of speciation events themselves. It is the task of this paper to attempt to bring speciation events into some kind of general scheme, based primarily upon the work of Sergey Gavrilets on adaptive landscapes, using migration rate, or gene flow, as the primary scale, and concluding that adaptive and drift explanations are complementary rather than competing. I propose a distinction between intrinsic and extrinsic selection, and the notion of reproductive reach and argue that speciation modes should be discriminated in terms of gene flow, the nature of selection maintaining reproductive reach, and whether the predominant cause is selective or stochastic. I also suggest that the notion of an adaptive “quasispecies” for asexual species is the primitive notion of species, and that members of reproductively coherent sexual species are additionally coadapted to their mating partners.

Pierre Trémaux’s 1865 ideas on speciation have been unjustly derided following his acceptance by Marx and rejection by Engels, and almost nobody has read his ideas in a charitable light. Here we offer an interpretation based on translating the term sol as “habitat”, in order to show that Trémaux proposed a theory of allopatric speciation before Wagner and a punctuated equilibrium theory before Gould and Eldredge, and translate the relevant discussion from the French. We believe he may have influenced Darwin’s revision to the third edition of the Origin on rates of evolution, and suggest that Gould’s dismissal of Trémaux is motivated by concern that others might think punctuated equilibrium theory was tainted by a connection with Trémaux.

Scientists and philosophers routinely talk about phenomena, and the ways in which they relate to explanation, theory and practice in science. However, there are very few definitions of the term, which is often used synonymously with "data'', "model'' and in older literature, "hypothesis''. In this paper I will attempt to clarify how phenomena are recognized, categorized and the role they play in scientific epistemology. I conclude that phenomena are not necessarily theory-based commitments, but that they are what explanations are called to account for, which are not presently explained.

Part I includes pieces by Phillip Sloan on how Darwin theorized evolution, Jon Hodge on the Notebooks and the years Darwin spent in London after the voyage of the Beagle , and essays on Darwin’s views on heredity (Jim Endersby), on mind and the emotions (Robert Richards) and the argument structure of the Origin (Ken Waters). All of these are excellent and nuanced, and well referenced, written by leading specialists on each topic. Endersby’s essay in particular introduced me to material I hadn’t previously encountered

People often have beliefs that are widely regarded as silly by the experts or by the general population. This leads us to ask why believers believe silly things if they are widely thought to be silly, and then why believers believe the specific things they do. I propose that silly beliefs function as in-group and out-group tribal markers. Such markers act as an honest costly signal; honest and costly because such beliefs are hard to fake. Then I offer a developmentalist account of belief formation, in which beliefs are seen to be the result of a process of acquiring beliefs as cheaply and effectively as possible, leading to a reluctance to abandon early core beliefs later in life. Then I consider whether beliefs even can form a unified worldview, and ask how conversion occurs within the developmental characterization I propose. Finally, I consider how this may play out in terms of crises of faith.

Features Covers the philosophical and historical development of the concept of "species" Documents that variation was recognized by pre-Darwinian scholars Includes a section on the debates since the time of the New Synthesis Better suited to non-philosophers Summary Over time the complex idea of "species" has evolved, yet its meaning is far from resolved. This comprehensive work is a fresh look at an idea central to the field of biology by tracing its history from antiquity to today. Species is a benchmark exploration and clarification of a concept fundamental to the past, present, and future of the natural sciences. In this edition, a section is added on the debate over species since the time of the New Synthesis, and brings the book up to date. A section on recent philosophical debates over species has also been added. This edition is better suited non-specialists in philosophy, so that it will be of greater use for scientists wishing to understand how the notion came to be that living organisms form species.

Now a section in my 2018 book _Species: The evolution of the idea_. It is often claimed that species are the units of evolution, but this is not defined or clearly explained. In this paper I will argue that species are phenomenal objects that stand in need of explanation, but that they are not objects required by any theory of biology. I further define, or rather describe, species as the genealogical cluster of various lineages at the genetic, haplotype, genomic, organismic, and population level, in keeping with my previous discussions.

The biological species (biospecies) concept applies only to sexually reproducing species, which means that until sexual reproduction evolved, there were no biospecies. On the universal tree of life, biospecies concepts therefore apply only to a relatively small number of clades, notably plants andanimals. I argue that it is useful to treat the various ways of being a species (species modes) as traits of clades. By extension from biospecies to the other concepts intended to capture the natural realities of what keeps taxa distinct, we can treat other modes as traits also, and so come to understand that theplurality of species concepts reflects the biological realities of monophyletic groups.We should expect that specialists in different organisms will tend to favour those concepts that best represent the intrinsic mechanisms that keep taxa distinct in their clades. I will address the question whether modes ofreproduction such as asexual and sexual reproduction are natural classes, given that they are paraphyletic in most clades.