Elliott Sober

Solipsism poses a familiar epistemological problem. Each of us has beliefs about a world that allegedly exists outside our own minds. The problem is to justify these nonsolipsistic convictions. One standard approach is to argue that the existence of things outside our own sensations may reasonably be inferred from regularities that obtain within our sensations. Certain experiences, which I will call tiger sounds and tiger visual images, exhibit a striking correlation. We can explain the existence of this correlation by postulating an entity that is a cause of both. If there were tigers, it would be no surprise that certain sights and certain sounds tend to co-occur. Our rejection of solipsism can thus be justified by appeal to an abductive argument; we advance an inference to the best explanation conforming to the pattern that Reichenbach called the principle of the common cause.

The substance of the commentaries, however, reveals considerable disagreement about how UO conceptualizes the idea of group selection. Dennett describes the issues as “mind-twistingly elusive and slippery” and hints that it is mere hype to say that group selection has been revived. Barrett and Godfrey-Smith discuss the problem of multiple perspectives at length and claim that we are too liberal in our definition of groups. We believe that these criticisms obscure the simplicity of the basic question that group selection theory is designed to answer and the historical continuity of that theory, from Darwin to the present.

I consider three theses that are friendly to anthropomorphism. Each makes a claim about what can be inferred about the mental life of chimpanzees from the fact that humans and chimpanzees both have behavioral trait B and humans produce this behavior by having mental trait M. The first thesis asserts that this fact makes it probable that chimpanzees have M. The second says that this fact provides strong evidence that chimpanzees have M. The third claims that the fact is evidence that chimpanzees have M. The third thesis follows from a plausible Reichenbachian model of how a common ancestor is probabilistically related to its descendants. The first two theses do not, and they have no general evolutionary justification

When two causally independent processes each have a quantity that increases monotonically (either deterministically or in probabilistic expectation), the two quantities will be correlated, thus providing a counterexample to Reichenbach's principle of the common cause. Several philosophers have denied this, but I argue that their efforts to save the principle are unsuccessful. Still, one salvage attempt does suggest a weaker principle that avoids the initial counterexample. However, even this weakened principle is mistaken, as can be seen by exploring the concepts of homology and homoplasy used in evolutionary biology. I argue that the kernel of truth in the principle of the common cause is to be found by separating metaphysical and epistemological issues; as far as the epistemology is concerned, the Likelihood Principle is central.

After clarifying how Darwin understood natural selection and common ancestry, I consider how the two concepts are related in his theory. I argue that common ancestry has an evidential priority. For Darwin, arguments about natural selection often make use of the assumption of common ancestry, whereas defending common ancestry does not require the assumption that natural selection has been at work. In fact, Darwin held that the key evidence for common ancestry comes from characters whose evolution is not caused by natural selection. This raises the question of why Darwin puts natural selection first and foremost in the Origin.

Akaike’s framework for thinking about model selection in terms of the goal of predictive accuracy and his criterion for model selection have important philosophical implications. Scientists often test models whose truth values they already know, and they often decline to reject models that they know full well are false. Instrumentalism helps explain this pervasive feature of scientific practice, and Akaike’s framework helps provide instrumentalism with the epistemology it needs. Akaike’s criterion for model selection also throws light on the role of parsimony considerations in hypothesis evaluation. I explain the basic ideas behind Akaike’s framework and criterion; several biological examples, including the use of maximum likelihood methods in phylogenetic inference, are considered.

When philosophers defend epiphenomenalist doctrines, they often do so by way of a priori arguments. Here we suggest an empirical approach that is modeled on August Weismann’s experimental arguments against the inheritance of acquired characters. This conception of how epiphenomenalism ought to be developed helps clarify some mistakes in two recent epiphenomenalist positions – Jaegwon Kim’s (1993) arguments against mental causation, and the arguments developed by Walsh (2000), Walsh, Lewens, and Ariew (2002), and Matthen and Ariew (2002) that natural selection and drift are not causes of evolution. A manipulationist account of causation (Woodward 2003) leads naturally to an account of how macro- and micro-causation are related and to an understanding of how epiphenomenalism at different levels of organization should be understood.

Philosophy of mind is, and for a long while has been, 99% metaphysics and 1% epistemology. But the fundamental question cognitive ethologists face is epistemological: what count as evidence that a creature has a mind, and if the creature does have a mind, what evidence is relevant to deciding which mental state should be attributed to it? The usual answer that cognitive ethologists give is that one’s explanation should be “conservative”. It recommends a two-part plausibility ordering: mindless is preferred to minded, and first-order intentionality is preferred to second-order intentionality. I argue that the principle of conservatism is not a parsimony principle, and it doesn’t have any justification. What is needed is observational test. I also suggest a strategy for designing experiments in the future. What I offered here is a methodological version of naturalism.

It is a challenge to explain how evolutionary altruism can evolve by the process of natural selection, since altruists in a group will be less fit than the selfish individuals in the same group who receive benefits but do not make donations of their own. Darwin proposed a theory of group selection to solve this puzzle. Very simply, even though altruists are less fit than selfish individuals within any single group, groups of altruists are more fit than groups of selfish individuals. If a population is subdivided into many groups that vary in their altruistic tendencies, altruism will be favored at the level of selection among groups even as it is being disfavored at the level of selection among individuals within groups. Darwin’s scenario became the basis for a theoretical framework called multilevel selection theory.

Do traits evolve because they are good for the group, or do they evolve because they are good for the individual organisms that have them? The question is whether groups, rather than individual organisms, are ever “units of selection.” My exposition begins with the 1960’s, when the idea that traits evolve because they are good for the group was criticized, not just for being factually mistaken, but for embodying a kind of confused thinking that is fundamentally at odds with the logic that Darwin’s theory requires. A counter-movement has arisen since the 1960’s, called multi-level selection theory, according to which selection acts at multiple levels, including the level of the group. After discussing the 1960’s attack on group selection and the concept’s subsequent revival, I examine Darwin’s views on the subject. I discuss what Darwin says about four examples: human morality, the barbed stinger of the honeybee, neuter workers in species of social insect, and the sterility of many interspecies hybrids. I argue that Darwin defended hypotheses of group selection in the first three problems, but rejected it in the fourth. I also discuss Darwin’s general views about the role of group selection in evolution.

As a species of egoism, Hedonism holds that our only ultimate pleasure is the self-directed desire for pleasure and the avoidance of pain. Bishop Butler is widely regarded as having refuted hedonism. I argue that Butler's argument failed to undermine Hedonism, because his premises concern what people want, while Hedonism concerns why people have the wants they do. Even if the desires for external things were a prerequisite for obtaining pleasure, nothing would follow about why people desire external things.

It is widely held that in the eighteenth and nineteenth and centuries history came into its own as a proper object of scientific scrutiny, and that the work of Darwin and Marx was decisive in this regard. We readily concede the revolutionary character of Darwinism and Marxism in relation to earlier accounts of natural and human history. And we agree too, as is widely supposed, that there are important conceptual affinities joining Darwin's theory of evolution and Marx's theory of history. However, it has not been sufficiently appreciated how these theories differ-precisely in the sense they count as historical. Evolutionary theory and historical materialism exemplify different strategies for making history an object of theoretical investigation. By reflecting on these differences, we can gain some purchase on the kind of theory historical materialism is and appreciate the very special sense in which Marx did indeed construct an historical theory.

In what follows, I’ll discuss both the metaphysics and the epistemology of supervenience from a probabilistic point of view. The first half of this paper will explore how supervenience claims are related to other issues; these will include the thesis that physics is causally complete, the claim that there are emergent properties, the idea that mental properties are causally efficacious, and the notion that there are scientific laws about supervenient properties that generalize over systems that deploy different physical realizations of the properties in question. The second half will examine the question of how observational evidence can lend support to supervenience claims. This problem turns out to raise some surprisingly deep issues about the nature of hypothesis testing in science.

It is a challenge to explain how evolutionary altruism can evolve by the process of natural selection, since altruists in a group will be less fit than the selfish individuals in the same group who receive benefits but do not make donations of their own. Darwin proposed a theory of group selection to solve this puzzle. Very simply, even though altruists are less fit than selfish individuals within any single group, groups of altruists are more fit than groups of selfish individuals. If a population is subdivided into many groups that vary in their altruistic tendencies, altruism will be favored at the level of selection among groups even as it is being disfavored at the level of selection among individuals within groups. Darwin’s scenario became the basis for a theoretical framework called multilevel selection theory.

I am grateful to Philip Kitcher for inviting me to comment on Alexander Rosenberg's (1996) review of Philosophy of Biology (Sober 1993) and to Rosenberg for his kind words about my book at the very beginning and the very end of his review. However, I cannot help feeling that most of the material in Rosenberg's review describes a different book from the one I wrote. Of the four philosophical claims that he ascribes to me, only one of them is asserted or implied in Philosophy of Biology. Rosenberg is right that I have argued that many evolutionary laws turn out, when stated carefully, to be a priori mathematical truths. However, he is mistaken in thinking that I am a "historicist" who holds that "fundamental theory in biology is narrative." Rosenberg also misconstrues my views on the meaning of probability statements in evolutionary theory.

God and numbers provide two challenges to metaphysical naturalism–the former if God exists and is a supernatural being, the latter if numbers exist and mathematical Platonism is true. Evolutionary theory is often described as having a commitment to naturalism, but this is doubly wrong. The theory is neutral on the question of whether God exists and mathematical evolutionary theory entails that numbers exist. The chapter develops the point about theistic neutrality by considering what evolutionary biologists mean when they say that mutations are “unguided.” Evolutionary theory is logically compatible with deism and also with various interventionist theologies. In connection with mathematical evolutionary theory, the chapter discusses and criticizes the indispensability argument for mathematical Platonism developed by Quine and Putnam. The chapter criticizes their epistemological holism by considering ideas in Bayesian confirmation theory.

Philosophers have explored objective interpretations of probability mainly by considering empirical probability statements. Because of this focus, it is widely believed that the logical interpretation and the actual-frequency interpretation are unsatisfactory and the hypothetical-frequency interpretation is not much better. Probabilistic assertions in pure mathematics present a new challenge. Mathematicians prove theorems in number theory that assign probabilities. The most natural interpretation of these probabilities is that they describe actual frequencies in finite sets and limits of actual frequencies in infinite sets. This interpretation vindicates part of what the logical interpretation of probability aimed to establish.

Historical sciences like evolutionary biology reconstruct past events by using the traces that the past has bequeathed to the present. Markov chain theory entails that the passage of time reduces the amount of information that the present provides about the past. Here we use a Moran process framework to show that some evolutionary processes destroy information faster than others. Our results connect with Darwin’s principle that adaptive similarities provide scant evidence of common ancestry whereas neutral and deleterious similarities do better. We also describe how the branching in phylogenetic trees affects the information that the present supplies about the past

Ockham's razor, the principle of parsimony, states that simpler theories are better than theories that are more complex. It has a history dating back to Aristotle and it plays an important role in current physics, biology, and psychology. The razor also gets used outside of science - in everyday life and in philosophy. This book evaluates the principle and discusses its many applications. Fascinating examples from different domains provide a rich basis for contemplating the principle's promises and perils. It is obvious that simpler theories are beautiful and easy to understand; the hard problem is to figure out why the simplicity of a theory should be relevant to saying what the world is like. In this book, the ABCs of probability theory are succinctly developed and put to work to describe two 'parsimony paradigms' within which this problem can be solved.

Nelson Goodman suggests that a generalization of the form “all A’s are B” is confirmable by an observed instance only if the generalization is law-like. Jackson and Pargetter deny this and give examples of how accidental generalizations can be confirmed. A possible response from Goodman appears to make these accidental generalizations look law-like, but I show it’s defective. And Jackson and Pargetter's substitute nomological condition fares no better than Goodman’s. Because of the multiplicity of possible background assumptions, I doubt that there is a single “nomological condition” that each and every act of confirmation must obey.

A phylogeny that allows for lateral gene transfer (LGT) can be thought of as a strictly branching tree (all of whose branches are vertical) to which lateral branches have been added. Given that the goal of phylogenetics is to depict evolutionary history, we should look for the best supported phylogenetic network and not restrict ourselves to considering trees. However, the obvious extensions of popular tree-based methods such as maximum parsimony and maximum likelihood face a serious problem—if we judge networks by fit to data alone, networks that have lateral branches will always fit the data at least as well as any network that restricts itself to vertical branches. This is analogous to the well-studied problem of overfitting data in the curve-fitting problem. Analogous problems often have analogous solutions and we propose to treat network inference as a case of model selection and use the Akaike Information Criterion (AIC). Strictly tree-like networks are more parsimonious than those that postulate lateral as well as vertical branches. This leads to the conclusion that we should not always infer LGT events whenever it would improve our fit-to-data, but should do so only when the improved fit is larger than the penalty for adding extra lateral branches.

Realists persuaded by indispensability arguments af- firm the existence of numbers, genes, and quarks. Van Fraassen's empiricism remains agnostic with respect to all three. The point of agreement is that the posits of mathematics and the posits of biology and physics stand orfall together. The mathematical Platonist can take heart from this consensus; even if the existence of num- bers is still problematic, it seems no more problematic than the existence of genes or quarks. If the two positions just described were the only ones possible, there could be no objection to this melding of numbers with genes and quarks. However, the position I call contrastive empiricism (Sober 1990a) stands opposed to both realism and to Van Fraassen's em- piricism. As it turns out, contrastive empiricism entails that coalesc- ing mathematics with empirical science is highly problematic. I believe that there is an important kernel of truth in abductive ar- guments for genes and quarks. But no counterpart argument exists for the case of numbers. Of course, the existence of this third way would be uninteresting, if contrastive empiricism were wholly implausible. However, I will argue that contrastive empiricism captures what makes sense in standard versions of realism and empiricism, while avoiding the excesses of each. This third way is a middle way; it cannot be dismissed out of hand.

The problem of simplicity involves three questions: How is the simplicity of a hypothesis to be measured? How is the use of simplicity as a guide to hypothesis choice to be justified? And how is simplicity related to other desirable features of hypotheses -- that is, how is simplicity to be traded-off? The present paper explores these three questions, from a variety of viewpoints, including Bayesianism, likelihoodism, and the framework of predictive accuracy formulated by Akaike (1973). It may turn out that simplicity has no global justification -- that its justification varies from problem to problem.