Elliott Sober

One possible interpretation of the species concept is that specifies are natural kinds. Another species concept is that species are individuals whose parts are organisms. Philip Kitcher takes seriously both these ideas; he sees a role for the genealogical/historical conception and also for the one that is “purely qualitative”. I criticize his ideas here. I see the genealogical conception at work in biological discussion of species and it is presupposed by an active and inventive research program, but the natural kind concept is not. I also criticize Kitcher’s criticisms against Hull’s position that species are individuals, including Kitcher’s idea that species are sets of organisms, his explanations of why “all swans are white” isn’t law-like, his discussion of the example of multiple origination. Finally, I argue that given the current evolutionary developments, pluralism is the "null hypothesis" that we should attempt to refute.

Ernst Mayr has argued that Darwinian theory discredited essentialist modes of thought and replaced them with what he has called "population thinking". In this paper, I characterize essentialism as embodying a certain conception of how variation in nature is to be explained, and show how this conception was undermined by evolutionary theory. The Darwinian doctrine of evolutionary gradualism makes it impossible to say exactly where one species ends and another begins; such line-drawing problems are often taken to be the decisive reason for thinking that essentialism is untenable. However, according to the view of essentialism I suggest, this familiar objection is not fatal to essentialism. It is rather the essentialist's use of what I call the natural state model for explaining variation which clashes with evolutionary theory. This model implemented the essentialist's requirement that properties of populations be defined in terms of properties of member organisms. Requiring such constituent definitions is reductionistic in spirit; additionally, evolutionary theory shows that such definitions are not available, and, moreover, that they are not needed to legitimize population-level concepts. Population thinking involves the thesis that population concepts may be legitimized by showing their connections with each other, even when they are not reducible to concepts applying at lower levels of organization. In the paper, I develop these points by describing Aristotle's ideas on the origins of biological variation; they are a classic formulation of the natural state model. I also describe how the development of statistical ideas in the 19th century involved an abandoning of the natural state model

Charles Stein discovered a paradox in 1955 that many statisticians think is of fundamental importance. Here we explore its philosophical implications. We outline the nature of Stein’s result and of subsequent work on shrinkage estimators; then we describe how these results are related to Bayesianism and to model selection criteria like AIC. We also discuss their bearing on scientific realism and instrumentalism. We argue that results concerning shrinkage estimators underwrite a surprising form of holistic pragmatism.

Reconstructing the Past seeks to clarify and help resolve the vexing methodological issues that arise when biologists try to answer such questions as whether human beings are more closely related to chimps than they are to gorillas. It explores the case for considering the philosophical idea of simplicity/parsimony as a useful principle for evaluating taxonomic theories of evolutionary relationships. For the past two decades, evolutionists have been vigorously debating the appropriate methods that should be used in systematics, the field that aims at reconstructing phylogenetic relationships among species. This debate over phylogenetic inference, Elliott Sober observes, raises broader questions of hypothesis testing and theory evaluation that run head on into long standing issues concerning simplicity/parsimony in the philosophy of science. Sober treats the problem of phylogenetic inference as a detailed case study in which the philosophical idea of simplicity/parsimony can be tested as a principle of theory evaluation. Bringing together philosophy and biology, as well as statistics, Sober builds a general framework for understanding the circumstances in which parsimony makes sense as a tool of phylogenetic inference. Along the way he provides a detailed critique of parsimony in the biological literature, exploring the strengths and limitations of both statistical and nonstatistical cladistic arguments.

After clarifying how Darwin understood natural selection and common ancestry, I consider how the two concepts are related in his theory. I argue that common ancestry has an evidential priority. For Darwin, arguments about natural selection often make use of the assumption of common ancestry, whereas defending common ancestry does not require the assumption that natural selection has been at work. In fact, Darwin held that the key evidence for common ancestry comes from characters whose evolution is not caused by natural selection. This raises the question of why Darwin puts natural selection first and foremost in the Origin.

In this paper I want to clarify what biologists are talking about when they talk about the evolution of altruism. I'll begin by saying something about the common sense concept. This familiar idea I'll call 'vernacular altruism.' One point of doing this is to make it devastatingly obvious that the common sense concept is very different from the concept as it's used in evolutionary theory. After that preliminary, I'll describe some features of the evolutionary concept. Then I'll conclude by briefly considering what explanatory relation might obtain between vernacular altruism and evolutionary altruism.

In what follows I will discuss an example of the Duhem-Quine problem in which Pr(H A), Pr(A H), and Pr(OI +H& ?A) (where H is the hypothesis, A the auxiliary assumptions, and O the observational prediction) can be construed objectively; however, only some of those quantities are relevant to the analysis that I provide. The example involves medical diagnosis. The goal is to test the hypothesis that someone has tuberculosis; the auxiliary assumptions describe the er- ror characteristics of the test procedure. Although it can make sense to talk about the objective probability that someone (randomly drawn from a given population) has tuberculosis and it also can make sense to talk about the objective probability that a test procedure has a certain set of error characteristics, neither of these quantities will enter into the analysis. The analysis proceeds entirely via likelihoods, what one needs to consider is just the probability of the observations conditional on four conjunctions of the form (?H & +A).' It is a special feature of the example that all four of these conjunctions are simple statistical hypotheses in the technical sense that each unambigu-ously confers a probability on the observations.'o After describing how the likelihood concept applies to the example concerning medical diagnosis, I will show how similar patterns can arise in the context of a second inferential framework-that of H. Akaike's criterion of model selection;" this time the example will involve phylogenetic inference.