Claus Emmeche

This book presents programmatic texts on biosemiotics, written collectively by world leading scholars in the field (Deacon, Emmeche, Favareau, Hoffmeyer, Kull, Markoš, Pattee, Stjernfelt). In addition, the book includes chapters which focus closely on semiotic case studies (Bruni, Kotov, Maran, Neuman, Turovski). According to the central thesis of biosemiotics, sign processes characterise all living systems and the very nature of life, and their diverse phenomena can be best explained via the dynamics and typology of sign relations. The authors are therefore presenting a deeper view on biological evolution, intentionality of organisms, the role of communication in the living world and the nature of sign systems - all topics which are described in this volume. This has important consequences on the methodology and epistemology of biology and study of life phenomena in general, which the authors aim to help the reader better understand.

The “practice turn” in philosophy of science has strengthened the connections between philosophy and scientific practice. Apart from reinvigorating philosophy of science, this also increases the relevance of philosophical research for science, society, and science education. In this paper, we reflect on our extensive experience with teaching mandatory philosophy of science courses to science students from a range of programs at University of Copenhagen. We highlight some of the lessons we have learned in making philosophy of science “fit for teaching” outside of philosophy circles by taking selected cases from the students’ own field as the starting point. We argue for adapting philosophy of science teaching to particular audiences of science students, and discuss the benefits of drawing on research within science education to inform curriculum and course design. This involves reconsidering teaching resources, assumptions about students, intended learning outcomes, and teaching formats. We also argue that to make philosophy of science relevant and engaging to science students, it is important to consider their potential career trajectories. By anticipating future contexts and situations in which methodological, conceptual, and ethical questions could be relevant, philosophy of science can demonstrate its value in the education of science students.

Theses on the semiotic study of life as presented here provide a collectively formulated set of statements on what biology needs to be focused on in order to describe life as a process based on semiosis, or sign action. An aim of the biosemiotic approach is to explain how life evolves through all varieties of forms of communication and signification (including cellular adaptive behavior, animal communication, and human intellect) and to provide tools for grounding sign theories. We introduce the concept of semiotic threshold zone and analyze the concepts of semiosis, function, umwelt, and the like as the basic concepts for theoretical biology.

Semiotic inquiry relating the natural sciences to an evolutionary philosophy of nature must address the relations between physical, biological and psychic systems. This can be done in various ways that either emphasize substantial differences between extensional and intensional descriptions, or strive to bridge the gap between theories of mind and matter be means of semiotic notions. Biosemiotics can contribute to integrate our concepts of matter, energy and sign systems such as the notion of a basic molecular code, which is not merely a chemical notion. It is argued that a semiotics of biological systems is in harmony with a pluralist ontology of emergent levels of organization. --- Published in: Edwina Taborsky, ed. (1999): Semiosis. Evolution. Energy: Towards a Reconceptualization of the Sign. Shaker Verlag, Aachen. (pp. 89-108). The book is based on the meeting "Semiosis. Evolution. Energy, Third International Conference on Semiotics", Victoria Colledge, University of Toronto, Canada, October 17-19, 1997.

The aim of this paper is to investigate the relationship between information and abductive reasoning in the context of problem-solving, focusing on non-human animals. Two questions guide our investigation: What is the relation between information and abductive reasoning in the context of human and non-human animals? Do non-human animals perform discovery based on inferential processes such as abductive reasoning? In order to answer these questions, we discuss the semiotic concept of information in relation to the concept of abductive reasoning and, more specifically, to the notion of manipulative abduction proposed by Magnani. Finally, we investigate a case study of corvids’ intelligence, namely, their capacity of causal cognition.

It is argued that the notion of Umwelt is relevant for contemporary discussions within theoretical biology, biosemiotics, the study of Artificial Life, Autonomous Systems Research and philosophy of biology. Focus is put on the question of whether an artificial creature can have a phenomenal world in the sense of the Umwelt notion of Jakob von Uexküll, one of the founding figures of biosemiotics. Rather than vitalism, Uexküll's position can be interpreted as a version of qualitative organicism. A historical sketch of Autonomous Systems Research (ASR) is presented to show its theoretical roots and fruitful opposition to traditional AI style robotics. It is argued that these artificial systems are only partly 'situated' because they do not in the full sense of the word experience an Umwelt. A deeper understanding of truly situated autonomous systems as being a kind of complex selforganizing semiotic agents with emergent qualitative properties must be gained, not only from the broad field of theoretical biology, but also from the perspective of biosemiotics in the Uexküll tradition. The paper is thus an investigation of a new notion of autonomy that includes a qualitative aspect of the organism. This indicates that the Umwelt concept is not reducible to purely functional notions.

In this essay review of Alin Olteanu: "Multiculturalism as Multimodal Communication: A Semiotic Perspective" ([Series Numanities – Arts and Humanities in Progress 9; Dario Martinelli, series editor], Cham: Springer, 2019) I discuss culturalism, multiculturalism, and polyculturalism, and a problematic style of reasoning seen in some contributions to the humanities, a style here called "associative hermeneutics", with no genuine theory construction. As a contrast to this style, I illustrate some challenges of understanding multiculturalism through an example, the question of how to interpret friendship across cultures as seen from the point of view of cross-cultural friendship research.

The development of form in living organisms continues to challenge biological research. The concept of biological information encoded in the genetic program that controls development forms a major part of the semiotic metaphor in biology. Development is here seen in analogy to an execution of a program, written in a formal language in the computer. Other versions of the semiotic or "nature-as-language" metaphor use other formal or informal aspects of language to comprehend the specific structural relations in nature as explored by molecular and evolutionary biology. This intuitively appealing complex of related ideas, which has a long history in the philosophy of nature and biology, is critically reviewed. The general nature of metaphor in science is considered, and different levels of metaphorical transfer of signification is distinguished. It is argued, that the metaphors may be of considerable value, not only heuristically, but in order to comprehend the irreducible nature of living organisms. In arguing for a semiotic perspective on living nature, it makes a marked difference whether the departure is made from the tradition of F. de Saussure´s structural linguistics or from the tradition of general semiotics of C. S. Peirce. An agenda is made for a Peircean perspective on the semiotics of nature.

It is argued, that theory sf signs, especially in the tradition of the great philosopher Charles Sanders Peirce (1839–1914) can inspire the study of central problems in the philosophy of biology. Three such problems are considered: (1) The nature of biology as a science, where a semiotically informed pluralistic approach to the theory of science is introduced. (2) The peculiarity of the general object of biology, where a realistic interpretation of sign- and information-concepts is required to see sign-processes as immanent in nature. (3) The possibility of an artificial construction of life, hereby discussed as a conceptual problem in the present form of the artificial life project and its implied definition of life.

Terms loaded with informational connotations are often employed to refer to genes and their dynamics. Indeed, genes are usually perceived by biologists as basically ‘the carriers of hereditary information.’ Nevertheless, a number of researchers consider such talk as inadequate and ‘just metaphorical,’ thus expressing a skepticism about the use of the term ‘information’ and its derivatives in biology as a natural science. First, because the meaning of that term in biology is not as precise as it is, for instance, in the mathematical theory of communication. Second, because it seems to refer to a purported semantic property of genes without theoretically clarifying if any genuinely intrinsic semantics is involved. Biosemiotics, a field that attempts to analyze biological systems as semiotic systems, makes it possible to advance in the understanding of the concept of information in biology. From the perspective of Peircean biosemiotics, we develop here an account of genes as signs, including a detailed analysis of two fundamental processes in the genetic information system (transcription and protein synthesis) that have not been made so far in this field of research. Furthermore, we propose here an account of information based on Peircean semiotics and apply it to our analysis of transcription and protein synthesis.

Is life a property of the material structure of a living system or an abstract form of organization that can be realized in other media; artificial as well as natural? One version of the Artificial Life research programme presumes, that one can separate the logical form of an organism from its material basis of construction, and that its capacity to live and reproduce is a property of the form, not the matter (Langton 1989). This seems to oppose the notion of a cell within contemporary molecular biology, according to which "form" and "matter" do not represent separate realms. The information in a living cell is intimately bound to the properties of the material substrate. This condition may represent a restriction on the validity of formal theories of life.

The increasing problem of bioinvasion (the mixing up of natural species characterising the planet's local ecosystems due to globalisation) is investigated as an example of an ecosemiotic problematic. One concern is the scarcity of scientific knowledge about long term ecological and evolutionary consequences of invading species. It is argued that a natural science conception of the ecology of bioinvasion should be supplemented with an ecosemiotic understanding of the significance of these problems in relation to human culture, the question of cultural diversity, and what it means to be indigenous or foreign. Bioinvasion, extinction of native species, and overall decrease in biodiversity, may go along with decreased cultural diversity; as when the loss of local agricultural traditions lead to genetic erosion. There are possible ecosemiotic parallels between language extinction and species extinction, both being related to globalisation. It is argued that the case of bioinvasion reveals the existence of two kinds of ecosemiotic contingency, (1) evolutionary openended and partly random generation of new species and extinction of old ones; (2) the historicity of culture in general and "culture's nature" specifically in the demarcation of a set of landscapes characteristic to a particular nation and piece of human history.

The idea of a higher level phenomenon having a downward causal influence on a lower level process or entity has taken a variety of forms. In order to discuss the relation between emergence and downward causation, the specific variety of the thesis of downward causation (DC) must be identified. Based on some ontological theses about inter-level relations, types of causation and the possibility of reduction, three versions of DC are distinguished. Of these, the `Strong' form of DC is held to be in conflict with contemporary science; the `Medium' version of DC may for instance describe thoughts constraining neurophysiological states, while the `Weak' form of DC is physically acceptable but may not in practice be a feasible description of the mind/brain or the cell/molecule relation. All forms have their specific problems, but the Medium and the Weak version seems to be most promising

A historical sketch of Autonomous Systems Research (ASR) is presented to show its roots in cybernetics, AI, Robotics, Cognitive Science, and in theoretical biology. These connections are considered in the light of the epistemology of human observers as a special kind of agents modeling other systems as representing and eventually realising autonomy. It is argued that ASR must primarily be understood as an opposition to traditional AI style ‘disembodied’ robotics, and that contemporary ASR provides a partial shift of focus towards the organismic roots of cognition. Finally, it is suggested that a deeper understanding of situated autonomous systems as being a kind of complex self-organizing semiotic agents with emergent qualitative properties can be gained from the broad field of theoretical biology, including recent perspectives from Artificial Life, Evolutionary Systems, the Developmental Systems Approach, and Biosemiotics. Inspired by theoretical biology we suggest to investigate a new notion of autonomy that includes a qualitative aspect of the organism.

The evolutionary emergence of biological processes in organisms with inner, qualitative aspects has not been explained in any sufficient way by neurobiology, nor by the traditional neo-Darwinian paradigm — natural selection would appear to work just as well on insentient zombies (with the right behavioral input-output relations) as on real sentient animals. In consciousness studies one talks about the ‘hard problem’ of qualia. In this paper I sketch a set of principles about sign action, causality and emergent evolution. On the basis of these principles, I characterize a concept of cause that would allow for a naturalistic explanation of the origin of consciousness. The suggested account of causation also turns the ‘hard problem’ of qualia into the easier problem of relating experimental biology to experiential biology.