Michael Weisberg

Simulation and Similarity: Using Models to Understand the World is an account of modeling in contemporary science. Modeling is a form of surrogate reasoning where target systems in the natural world are studied using models, which are similar to these targets. My book develops an account of the nature of models, the practice of modeling, and the similarity relation that holds between models and their targets. I also analyze the conceptual tools that allow theorists to identify the trustworthy aspects of models. Taken as a whole, I try to account for the ways that modeling is actually practiced by theorists, while abstracting sufficiently to understand the similarities and differences among examples of concrete, mathematical, and computational modeling.I am grateful to Wendy Parker, Jay Odenbaugh, and Bill Wimsatt for their careful and interesting reading of my book, as well as their constructive criticisms. Although I naturally disagree with some of their critiques, I have learned much ..

Chemistry is the study of the structure and transformation of matter. When Aristotle founded the field in the 4th century BCE, his conceptual grasp of the nature of matter was tailored to accommodate a relatively simple range of observable phenomena. In the 21st century, chemistry has become the largest scientific discipline, producing over half a million publications a year ranging from direct empirical investigations to substantial theoretical work. However, the specialized interest in the conceptual issues arising in chemistry, hereafter Philosophy of Chemistry, is a relatively recent addition to philosophy of science. Philosophy of chemistry has two major parts. In the first, conceptual issues arising within chemistry are carefully articulated and analyzed. Such questions which are internal to chemistry include the nature of substance, atomism, the chemical bond, and synthesis. In the second, traditional topics in philosophy of science such as realism, reduction, explanation, confirmation, and modeling are taken up within the context of chemistry.

Because of its complexity, contemporary scientific research is almost always tackled by groups of scientists, each of which works in a different part of a given research domain. We believe that understanding scientific progress thus requires understanding this division of cognitive labor. To this end, we present a novel agent-based model of scientific research in which scientists divide their labor to explore an unknown epistemic landscape. Scientists aim to climb uphill in this landscape, where elevation represents the significance of the results discovered by employing a research approach. We consider three different search strategies scientists can adopt for exploring the landscape. In the first, scientists work alone and do not let the discoveries of the community as a whole influence their actions. This is compared with two social research strategies, which we call the follower and maverick strategies. Followers are biased towards what others have already discovered, and we find that pure populations of these scientists do less well than scientists acting independently. However, pure populations of mavericks, who try to avoid research approaches that have already been taken, vastly outperform both of the other strategies. Finally, we show that in mixed populations, mavericks stimulate followers to greater levels of epistemic production, making polymorphic populations of mavericks and followers ideal in many research domains.

This paper examines a series of Schelling-like models of residential segregation, in which agents prefer to be in the minority. We demon- strate that as long as agents care about the characteristics of their wider community, they tend to end up in a segregated state. We then investigate the process that causes this, and conclude that the result hinges on the similarity of informational states amongst agents of the same type. This is quite dierent from Schelling-like behavior, and sug- gests (in his terms) that segregation is an instance of macro behavior which can arise from a wide variety of micro motives.

The covalent bond, a difficult concept to define precisely, plays a central role in chemical predictions, interventions, and explanations. I investigate the structural conception of the covalent bond, which says that bonding is a directional, submolecular region of electron density, located between individual atomic centers and responsible for holding the atoms together. Several approaches to constructing molecular models are considered in order to determine which features of the structural conception of bonding, if any, are robust across these models. Key components of the structural conception are absent in all but the simplest quantum mechanical models of molecular structure, seriously challenging the conception’s viability. †To contact the author, please write to: Department of Philosophy, University of Pennsylvania, 433 Cohen Hall, Philadelphia, PA 19104‐6304; e‐mail: [email protected].

Nobel laureate Roald Hoffmann's contributions to chemistry are well known. Less well known, however, is that over a career that spans nearly fifty years, Hoffmann has thought and written extensively about a wide variety of other topics, such as chemistry's relationship to philosophy, literature, and the arts, including the nature of chemical reasoning, the role of symbolism and writing in science, and the relationship between art and craft and science. In Roald Hoffmann on the Philosophy, Art, and Science of Chemistry, Jeffrey Kovac and Michael Weisberg bring together twenty-eight of Hoffmann's most important essays. Gathered here are Hoffmann's most philosophically significant and interesting essays and lectures, many of which are not widely accessible. In essays such as "Why Buy That Theory," "Nearly Circular Reasoning," "How Should Chemists Think," "The Metaphor, Unchained," "Art in Science," and "Molecular Beauty," we find the mature reflections of one of America's leading scientists. Organized under the general headings of Chemical Reasoning and Explanation, Writing and Communicating, Art and Science, Education, and Ethics, these stimulating essays provide invaluable insight into the teaching and practice of science.

Many standard philosophical accounts of scientific practice fail to distinguish between modeling and other types of theory construction. This failure is unfortunate because there are important contrasts among the goals, procedures, and representations employed by modelers and other kinds of theorists. We can see some of these differences intuitively when we reflect on the methods of theorists such as Vito Volterra and Linus Pauling on the one hand, and Charles Darwin and Dimitri Mendeleev on the other. Much of Volterra's and Pauling's work involved modeling; much of Darwin's and Mendeleev's did not. In order to capture this distinction, I consider two examples of theory construction in detail: Volterra's treatment of post-WWI fishery dynamics and Mendeleev's construction of the periodic system. I argue that modeling can be distinguished from other forms of theorizing by the procedures modelers use to represent and to study real-world phenomena: indirect representation and analysis. This differentiation between modelers and non-modelers is one component of the larger project of understanding the practice of modeling, its distinctive features, and the strategies of abstraction and idealization it employs

Roald Hoffmann and other theorists claim that we ought to use highly idealized chemical models (“qualitative models”) in order to increase our understanding of chemical phenomena, even though other models are available which make more highly accurate predictions. I assess this norm by examining one of the tradeoffs faced by model builders and model users—the tradeoff between precision and generality. After arguing that this tradeoff obtains in many cases, I discuss how the existence of this tradeoff can help us defend Hoffmann's norm for modelling.

This paper is an interpretation and defense of Richard Levins’ “The Strategy of Model Building in Population Biology,” which has been extremely influential among biologists since its publication 40 years ago. In this article, Levins confronted some of the deepest philosophical issues surrounding modeling and theory construction. By way of interpretation, I discuss each of Levins’ major philosophical themes: the problem of complexity, the brute-force approach, the existence and consequence of tradeoffs, and robustness analysis. I argue that Levins’ article is concerned, at its core, with justifying the use of multiple, idealized models in population biology.

Scientific research is almost always conducted by communities of scientists of varying size and complexity. Such communities are effective, in part, because they divide their cognitive labor: not every scientist works on the same project. Philip Kitcher and Michael Strevens have pioneered efforts to understand this division of cognitive labor by proposing models of how scientists make decisions about which project to work on. For such models to be useful, they must be simple enough for us to understand their dynamics, but faithful enough to reality that we can use them to analyze real scientific communities. To satisfy the first requirement, we must employ idealizations to simplify the model. The second requirement demands that these idealizations not be so extreme that we lose the ability to describe real-world phenomena. This paper investigates the status of the assumptions that Kitcher and Strevens make in their models, by first inquiring whether they are reasonable representations of reality, and then by checking the models' robustness against weakenings of these assumptions. To do this, we first argue against the reality of the assumptions, and then develop a series of agent-based simulations to systematically test their effects on model outcomes. We find that the models are not robust against weakenings of these idealizations. In fact we find that under certain conditions, this can lead to the model predicting outcomes that are qualitatively opposite of the original model outcomes

Theorizing in ecology and evolution often proceeds via the construction of multiple idealized models. To determine whether a theoretical result actually depends on core features of the models and is not an artifact of simplifying assumptions, theorists have developed the technique of robustness analysis, the examination of multiple models looking for common predictions. A striking example of robustness analysis in ecology is the discovery of the Volterra Principle, which describes the effect of general biocides in predator-prey systems. This paper details the discovery of the Volterra Principle and the demonstration of its robustness. It considers the classical ecology literature on robustness and introduces two individual-based models of predation, which are used to further analyze the Volterra Principle. The paper also introduces a distinction between parameter robustness, structural robustness, and representational robustness, and demonstrates that the Volterra Principle exhibits all three kinds of robustness. *Received September 2006; revised May 2007. ‡Earlier versions of this paper were presented at the Australasian Association of Philosophy, the London School of Economics, and the University of Bristol. The authors wish to thank those audiences as well as Patrick Forber, Ken Waters, Deena Skolnick Weisberg, Uri Wilensky, and Bill Wimsatt for many helpful comments. Special thanks to Giacomo Sillari for his assistance in translating Volterra's original paper and his insightful thoughts about Volterra's aims and methods. Some of the research in this paper was supported by NSF grant SES-0620887 to MW. †To contact the authors, please write to: Michael Weisberg, Department of Philosophy, University of Pennsylvania, 433 Logan Hall, Philadelphia, PA 19104; e-mail: [email protected]; Kenneth Reisman, Pluribo, Inc., 100 Park Avenue, Suite 1600, New York, NY 10017; e-mail: [email protected]