Clark Glymour

Contemporary cognitive neuropsychology attempts to infer unobserved features of normal human cognition, or ‘cognitive architecture’, from experiments with normals and with brain-damaged subjects in whom certain normal cognitive capacities are altered, diminished, or absent. Fundamental methodological issues about the enterprise of cognitive neuropsychology concern the characterization of methods by which features of normal cognitive architecture can be identified from such data, the assumptions upon which the reliability of such methods are premised, and the limits of such methods—even granting their assumptions—in resolving uncertainties about that architecture. With some idealization, the question of the capacities of various experimental designs in cognitive neuropsychology to uncover cognitive architecture can be reduced to comparatively simple questions about the prior assumptions investigators are willing to make. This paper presents some of simplest of those reductions.

The claims of science and the claims of probability combine in two ways. In one, probability is part of the content of science, as in statistical mechanics and quantum theory and an enormous range of "models" developed in applied statistics. In the other, probability is the tool used to explain and to justify methods of inference from records of observations, as in every science from psychiatry to physics. These intimacies between science and probability are logical sports, for while we think science aims to say what happens, what has happened, what will happen, what would happen if other things were to happen, what could and could not happen, what will nearly happen, or what will approximate what will happen, probability claims say none of these things, or at least none of them about the phenomena with which science is concerned. On that, at least, almost all philosophical interpreters of probability since DeMoivre agree, with whatever reluctance. Consider some examples.

Jaegwon Kim's Mind in a Physical World is an argument about mental causation that provides both a metaphysical theory and a lucid commentary on contemporary philosophical views. While I strongly recommend Kim's book to anyone interested in the subject, my endorsement is not unconditional, because I cannot make the same recomendation of the subject itself. Considering arguments of Davidson, Putnam, Burge, Block, and Kim himself, I conclude that the subject turns on a variety of implausible but received arguments, and that a useful study of mental causation cannot be divorced from scientific details of cognitive psychology, physics, and neuroscience.

Halvorson argues through a series of examples and a general result due to Myers that the “semantic view” of theories has no available account of formal theoretical equivalence. De Bouvere provides criteria overlooked in Halvorson’s paper that are immune to his counterexamples and to the theorem he cites. Those criteria accord with a modest version of the semantic view that rejects some of Van Fraassen’s apparent claims while retaining the core of Patrick Suppes’s proposal. I do not endorse any version of the semantic view of theories.

Using Gebharter’s representation, we consider aspects of the problem of discovering the structure of unmeasured submechanisms when the variables in those submechanisms have not been measured. Exploiting an early insight of Sober’s, we provide a correct algorithm for identifying latent, endogenous structure—submechanisms—for a restricted class of structures. The algorithm can be merged with other methods for discovering causal relations among unmeasured variables, and feedback relations between measured variables and unobserved causes can sometimes be learned

Drawing substantive conclusions from linear causal models that perform acceptably on statistical tests is unreasonable if it is not known how alternatives fare on these same tests. We describe a computer program, TETRAD, that helps to search rapidly for plausible alternatives to a given causal structure. The program is based on principles from statistics, graph theory, philosophy of science, and artificial intelligence. We describe these principles, discuss how TETRAD employs them, and argue that these principles make TETRAD an effective tool. Finally, we illustrate TETRAD's effectiveness by applying it to a multiple indicator model of Political and Industrial development. A pilot version of the TETRAD program is described in this paper. The current version is described in our forthcoming Discovering Causal Structure: Artificial Intelligence for Statistical Modeling.

One construal of convergent realism is that for each clear question, scientific inquiry eventually answers it. In this paper we adapt the techniques of formal learning theory to determine in a precise manner the circumstances under which this ideal is achievable. In particular, we define two criteria of convergence to the truth on the basis of evidence. The first, which we call EA convergence, demands that the theorist converge to the complete truth "all at once". The second, which we call AE convergence, demands only that for every sentence in the theorist's language, there is a time at which the theorist settles the status of the sentence. The relative difficulties of these criteria are compared for effective and ineffective agents. We then examine in detail how the enrichment of an agent's hypothesis language makes the task of converging to the truth more difficult. In particular, we parametrize first-order languages by predicate and function symbol arity, presence or absence of identity, and quantifier prefix complexity. For nearly each choice of values of these parameters, we determine the senses in which effective and ineffective agents can converge to the complete truth on an arbitrary structure for the language. Finally, we sketch directions in which our learning theoretic setting can be generalized or made more realistic

I argue that psychologists interested in human causal judgment should understand and adopt a representation of causal mechanisms by directed graphs that encode conditional independence (screening off) relations. I illustrate the benefits of that representation, now widely used in computer science and increasingly in statistics, by (i) showing that a dispute in psychology between ‘mechanist’ and ‘associationist’ psychological theories of causation rests on a false and confused dichotomy; (ii) showing that a recent, much-cited experiment, purporting to show that human subjects, incorrectly let large causes ‘overshadow’ small causes, misrepresents the most likely, and warranted, causal explanation available to the subjects, in the light of which their responses were normative; (iii) showing how a recent psychological theory (due to P. Cheng) of human judgment of causal power can be considerably generalized: and (iv) suggesting a range of possible experiments comparing human and computer abilities to extract causal information from associations

The ability to identify the mineral composition of rocks and soils is an important tool for the exploration of geological sites. Even though expert knowledge is commonly used for this task, it is desirable to create automated systems with similar or better performance. For instance, NASA intends to design robots that are sufficiently autonomous to perform this task on planetary missions. Spectrometer readings provide one important source of data for identifying sites with minerals of interest. Reflectance spectrometers measure intensities of light reflected from surfaces over a range of wavelengths. Spectral intensity patterns may in some cases be sufficiently distinctive for proper identification of minerals or classes of minerals. For some mineral classes, carbonates for example, specific short spectral intervals are known to carry a distinctive signature. Finding similar distinctive spectral ranges for other mineral classes is not an easy problem. We propose and evaluate data-driven techniques in two stages: first, evaluating algorithms to identify which components are probably present in a given rock; second, trying to improve this classification by automatically searching for spectral ranges optimized for specific classes of minerals. In one set of studies, we partition the whole interval of wavelengths available in our data into sub-intervals, or bins, and use a genetic algorithm to evaluate a candidate selection of subintervals. As an alternative to these computationally expensive search techniques, we present an entropy-based heuristic that gives higher scores for wavelengths more likely to distinguish between classes. Results are presented for four different classes, showing reasonable improvements in identifying some, but not all, of the mineral classes tested.