• Machine learning based privacy-preserving fair data trading in big data market
    with Y. Zhao, Y. Li, G. Han, and X. Du
    Information Sciences 478. 2019.
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    Copyright © 2016 by the American Society for Biochemistry and Molecular Biology, Inc.Human VLDLs assembled in the liver and secreted into the circulation supply energy to peripheral tissues. VLDL lipolysis yields atherogenic LDLs and VLDL remnants that strongly correlate with CVD. Although the composition of VLDL particles has been well-characterized, their 3D structure is elusive because of their variations in size, heterogeneity in composition, structural flexibility, and mobility in solution.…Read more
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    Knowledge of three-dimensional structures of each individual particles of asymmetric and flexible proteins is essential in understanding those proteins' functions; but their structures are difficult to determine. Electron tomography provides a tool for imaging a single and unique biological object from a series of tilted angles, but it is challenging to image a single protein for three-dimensional reconstruction due to the imperfect mechanical control capability of the specimen goniometer under …Read more
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    A reference genome for common bean and genome-wide analysis of dual domestications
    with J. Schmutz, P. E. McClean, S. Mamidi, G. A. Wu, S. B. Cannon, J. Grimwood, J. Jenkins, S. Shu, Q. Song, C. Chavarro, M. Torres-Torres, V. Geffroy, S. M. Moghaddam, D. Gao, B. Abernathy, K. Barry, M. Blair, M. A. Brick, M. Chovatia, P. Gepts, D. M. Goodstein, M. Gonzales, U. Hellsten, D. L. Hyten, G. Jia, J. D. Kelly, D. Kudrna, R. Lee, Richard M. M. S., P. N. Miklas, J. M. Osorno, J. Rodrigues, V. Thareau, C. A. Urrea, M. Wang, M. Zhang, R. A. Wing, P. B. Cregan, D. S. Rokhsar, and S. A. Jackson
    Common bean is the most important grain legume for human consumption and has a role in sustainable agriculture owing to its ability to fix atmospheric nitrogen. We assembled 473 Mb of the 587-Mb genome and genetically anchored 98% of this sequence in 11 chromosome-scale pseudomolecules. We compared the genome for the common bean against the soybean genome to find changes in soybean resulting from polyploidy. Using resequencing of 60 wild individuals and 100 landraces from the genetically differe…Read more