Department Affiliates
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MA program offered
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PhD program offered
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Also at University at Buffalo
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David Salmen, Tatiana Malyuta, Alan Hansen, Shaun Cronen, and Barry Smith, Integration of Intelligence Data through Semantic EnhancementIn David Salmen, Tatiana Malyuta, Alan Hansen, Shaun Cronen & Barry Smith (eds.), Integration of Intelligence Data through Semantic Enhancement, Ceur, Vol. 808. 2011.
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Barry Smith, Werner Ceusters, Louis J. Goldberg, and Richard Ohrbach, Towards an ontology of painIn Barry Smith, Werner Ceusters, Louis J. Goldberg & Richard Ohrbach (eds.), Towards an ontology of pain, Keio University Press. 2011.
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Dipak Kalra, Mark Musen, Barry Smith, and Werner Ceusters, ARGOS policy brief on semantic interoperabilityStudies in Health Technology and Informatics 170 (1): 1-15. 2011.
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Carol Bult, Harold Drabkin, Alexei Evsikov, Darren Natale, Cecilia Arighi, Natalia Roberts, Alan Ruttenberg, Peter D’Eustachio, Barry Smith, Judith Blake, and Cathy Wu, The representation of protein complexes in the Protein OntologyBMC Bioinformatics 12 (371): 1-11. 2011.
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Barry Smith and Richard H. Scheuermann, Guest Editorial: Ontologies for clinical and translational researchJournal of Biomedical Informatics 44 (1): 3--7. 2011.
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Barry Smith, Louis Goldberg, Michael Glick, and Alan Ruttenberg, More about ontology: ResponseJournal of the American Dental Association 142 (3): 252-254. 2011.
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Barry Smith, The Ontology of DocumentsIn Okada Mitsuhiro (ed.), Proceedings of the Conference on Ontology and Analytical Metaphysics, February 24-25, 2011, Keio University Press. pp. 1-6. 2011.
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Cecilia N. Arighi, Darren A. Natale, Judith A. Blake, Carol J. Bult, Michael Caudy, Alexander D. Diehl, Harold J. Drabkin, Peter D'Eustachio, Alexei Evsikov, Hongzhan Huang, Barry Smith, and Others , Protein-centric connection of biomedical knowledge: Protein Ontology research and annotation toolsIn Landgrebe Jobst & Smith Barry (eds.), Proceedings of the 2nd International Conference on Biomedical Ontology, Ceur, Vol. 833. pp. 285-287. 2011.
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Almeida Mauricio Barcellos, Proietti Anna Barbara de Freitas Carneiro, Ai Jiye, and Barry Smith, The Blood Ontology: An ontology in the domain of hematologyIn Barcellos Almeida Mauricio, Carneiro Proietti Anna Barbara de Freitas, Jiye Ai & Smith Barry (eds.), Proceedings of the Second International Conference on Biomedical Ontology, Buffalo, NY, July 28-30, 2011 (CEUR 883), . 2011.
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Jiye Ai, Mauricio Barcellos Almeida, André Queiroz De Andrade, Alan Ruttenberg, David Tai Wai Wong, and Barry Smith, Towards a Body Fluids Ontology: A unified application ontology for basic and translational scienceSecond International Conference on Biomedical Ontology , Buffalo, Ny 833 227-229. 2011.
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Albert Goldfain, Barry Smith, Sivaram Arabandi, Mathias Brochhausen, and William R. Hogan, Vital Sign OntologyIn Goldfain Albert, Smith Barry, Arabandi Sivaram, Brochhausen Mathias & Hogan William R. (eds.), Proceedings of the Workshop on Bio-Ontologies, ISMB, Vienna, June 2011, . pp. 71-74. 2011.
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Werner Ceusters, Maria Capolupo, G. De Moor, J. Devlies, and Barry Smith, An evolutionary approach to realism-based adverse event representationsMethods of Information in Medicine 50 (1): 62-73. 2011.
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Leila Patricia, H. Shah Nigam, F. Noy Natalya, Dai Benjamin, Dorf Michael, Griffith Nicholas, Jonquet Clement, Youn Cherie, Callendar Chris, Coulet Adrien, Barry Smith, Chris Chute, and Mark Musen, Bioportal: Ontologies and integrated data resources at the click of the mouseIn Whetzel Patricia L., Shah Nigam H., Noy Natalya F., Benjamin Dai, Michael Dorf, Nicholas Griffith, Clement Jonquet, Cherie Youn, Chris Callendar, Adrien Coulet, Smith Barry, Chute Chris & Musen Mark (eds.), Proceedings of the 2nd International Conference on Biomedical Ontology, Buffalo, NY. 2011.
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Andreas Tolk and Barry Smith, Command and Control OntologyInternational Journal of Intelligent Defence Support Systems (Special Issue) 4 (3). 2011.
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Jobst Landgrebe and Barry Smith, The HL7 approach to semantic interoperabilityIn Landgrebe Jobst & Smith Barry (eds.), Proceedings of the 2nd International Conference on Biomedical Ontology, Ceur, Vol. 833. pp. 139-146. 2011.
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Janna Hastings, Werner Ceusters, Barry Smith, and Kevin Mulligan, The Emotion Ontology: Enabling Interdisciplinary Research in the Affective SciencesIn Janna Hastings, Werner Ceusters, Barry Smith & Kevin Mulligan (eds.), The Emotion Ontology: Enabling Interdisciplinary Research in the Affective Sciences, Springer. pp. 119--123. 2011.
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Barry Smith and Jonathan Simon, Explications vérifactionnistesPhilosophiques 38 (1): 177-194. 2011.
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Andreas Tolk and Barry Smith, Editorial to the Special Issue on Command and Control OntologyInt. J. Intelligent Defence Support Systems 4 (3): 209-214. 2011.
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Barry Smith, Louis Goldberg, Alan Ruttenberg, and Michael Glick, Ontology and research: Authors’ responseJournal of the American Dental Association 142 (3). 2011.
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Barry Smith, CaBIG has another fundamental problem: it relies on ‘incoherent’ messaging standardThe Cancer Letter 37 (16): 1-6. 2011.
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James R. Beebe, A Priori SkepticismPhilosophy, Philosophy and Phenomenological Research 83 (3): 583-602. 2011.
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David Braun, Knowing How and Knowing AnswersIn John Bengson & Marc A. Moffett (eds.), Knowing How: Essays on Knowledge, Mind, and Action, Oxford University Press Usa. pp. 244. 2011.
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Maureen Donnelly, Endurantist and perdurantist accounts of persistencePhilosophical Studies 154 (1): 27-51. 2011.
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Robert Hoehndorf, Colin Batchelor, Thomas Bittner, Michel Dumontier, Karen Eilbeck, Rob Knight, Chris J. Mungall, Jane S. Richardson, Jesse Stombaugh, and Eric Westhof, The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure dataApplied ontology 6 (1): 53-89. 2011.
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David B. Hershenov, Soulless Organisms?American Catholic Philosophical Quarterly 85 (3): 465-482. 2011.
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Mélanie Courtot, Frank Gibson, Allyson L. Lister, James Malone, Daniel Schober, Ryan R. Brinkman, and Alan Ruttenberg, MIREOT: The minimum information to reference an external ontology termApplied ontology 6 (1): 23-33. 2011.
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Philippe Rocca-Serra, Alan Ruttenberg, Martin O'Connor, Patricia L. Whetzel, Daniel Schober, Jay Greenbaum, Mélanie Courtot, Ryan R. Brinkman, Susanna Assunta Sansone, and Richard Scheuermann, Overcoming the ontology enrichment bottleneck with Quick Term TemplatesApplied ontology 6 (1): 13-22. 2011.
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Stewart Duncan, Hobbes, Signification, and Insignificant NamesHobbes Studies 24 (2): 158-178. 2011.