Bhakti Madhava Puri, Ph. D.

One of the most important instances of distinct but inseparable entities is that of subject and object. When we carefully think about them, we realize that one term implies the other. In other words, a subject cannot possibly exist without a corresponding object otherwise we would never be able to talk about “subject.” In a similar way, an object can only be called an object because it is in relation to a subject. All opposites will in fact exhibit this same interdependence when we carefully think about them. For example, we could not speak of “blindness” if there were no one who could see. The word “blind” would never have any reason for its existence unless someone had the ability to see. Light and darkness, sleep and waking, day and night, etc. all such terms have meaning only in relation to their opposition to one another. Thus we conclude that this opposition is essential to the existence of either term. We can look at existence as a polar reality or polarity. One side rises or falls with the other. There is no possible way that one side can exist without the other.

Sense-certainty is the consciousness that Truth (what is/being) lies in particular external objects. For example, considering that the mountain is true, the tree is true, and so on. But truth is not immediate. Truth is necessarily mediated, i.e. a result, implying that it is arrived at. Thus, if a crime is claimed against someone before a judge, the judge does not accept it immediately as true. The truth of the claim has to be established, arrived at, through due process of presenting evidence, circumstances and arguments. The naïve realist accepts the evidence of his/her senses as true, as does the empirical scientist, but is unaware of the fact that there is process involved in making that determination. Divine Reason acts within all of creation, in which Man participates to some finite degree and, accordingly, is able to articulate that in the world. It is not so clear-cut as this, however, as the understanding would like it to be. The principle of the identity of identity and difference blurs the distinctions between God and Man so that, although the distinction is there, identity is also to be accounted for. It is this principle of simultaneous oneness and difference beyond understanding, and comprehensible only to what Hegel calls Speculative Reason that unlocks the door to the sphere of Spirit, or Absolute Knowledge. This is of course the broader perspective—the real science is in the details. Study of the Phenomenology is useful because it deals with the perspective of Reality from within consciousness and gradually leads to the comprehension of the Concept of which consciousness is only one aspect.

Religion is basically a consciousness or awareness of God. This means that Religion depends upon a difference between the finite subject or consciousness and the infinite object or God. This difference is maintained because of the way Man relates to God in religion, i.e. through feeling, love, etc. Philosophy is the scientific comprehension of Truth, in which an identity-in-difference is sought between the subject and object or concept and object. This is attained through thinking, and not through feeling. Religion and Philosophy often seem to be at odds in the beginning. This opposition is, however, reconciled by absolute knowledge. The love that is found in Religion is represented by the identity-in-difference principle that is found in Philosophy. The urge that the philosopher feels in the necessity to come to truth or oneness with truth, is the same urge that religion expresses in the feeling of love of God. It is merely a difference in the way they each proceed in fulfilling that need or necessity – one through thinking the other through feeling. The identity and difference of thinking and feeling is another topic that is dealt with by Hegel in his system.

As much as we may currently accept the Absolute as being Substance, to an equal degree we must now understand it as being Subject. Just as Spinoza shocked the age in which he taught that the Absolute was Substance, so too Hegel comes to shock our modern age with the Truth that Reality is Subject or Personality. "...alles darauf an, das Wahre nicht als Substanz, sondern eben so sehr als Subjekt aufzufassen und auszudrucken." "...everything turns on comprehending and expresssing the Absolute Truth, not only as Substance but just as certainly as Subject." GWF Hegel, Phenomenology of Spirit Personality is an undeniable element of Reality, as each of us affirms by our own existence. That personality should be the fundamental and irreducible nature of Reality as a whole as much as in part is rationally justifiable since the part may not have any greater quality than that of the whole to which it belongs. On the other hand, the concept that Reality is merely Substance is incomplete and therefore leaves us perplexed.

“Indeed, we now know that the proportion of genetic sequences on earth that belongs to visible organisms is negligible. Furthermore, only 15% of the genetic sequences found in the samples from the environment and from feces analyzed in metagenomic studies belong to the three domains of microbes currently recognized in the tree-of-life framework – bacteria, archaea, and eukaryotes. Viruses contain another 15-30% of these genetic sequences.” This means that the majority of unidentified genetic sequences pose an unresolved problem. Where do they come from? New genes suddenly appear, called ORFans (“orphan genes”) without any precursors. They may be produced by gene duplication, or fusion, or some other unknown process. Yet, Darwin’s tree of life concept would make it impossible to consider such processes. The transfer of genetic sequences from parasites to hosts could involve hundreds of genes for bacteria or viruses. But, as Raoult writes, “the current classification of the domains of life is based on the ribosome – the production apparatus of proteins – which does not exist in these viruses.” Adherence to the dogmatism of Darwin thus prevents these new discoveries, that overturn his century-and-a-half old teachings, from ever reaching the new generation of scientists. Raoult concludes, "Genetic research, in particular, must be free to find new models to explain, and enhance, twenty-first-century scientific discovery. Today, Darwin’s theory of evolution is more a hindrance than a help, because it has become a quasi-theological creed that is preventing the benefits of improved research from being fully realized."

Are physics and chemistry sufficient to provide a basis for a theory of everything? The worldview of materialist naturalism that forms the foundation of NeoDarwinian evolution, Big Bang cosmogony, and molecular biology in general has been subjected to challenge for its monumental failure to explain life, consciousness and other mind-related aspects of reality. Two recent books, Why Evolution is True by Jerry Coyne [1], and Thomas Nagel’s Mind and Cosmos: Why the Materialist NeoDarwinian Conception of Nature Is Almost Certainly False [2], both authors being atheists, reflect the deep rift we find, not only in the religious conflict between creation and evolution, but in the fundamental awareness we all have that we are more than just molecular matter. This common sense understanding can only escape the notice of a particularly shallow ideological dogmatism that insists it has all the answers based solely on its unprecedented technological success. Science has come to represent two different things: (a) a body of knowledge, and (b) a method for acquiring knowledge. The problem arises when it is forgotten that there is no independent body of knowledge for science apart from its method – it keeps changing according to the results of the latest findings of the scientific method. The method is not to be abandoned because of those who would like to replace it with a fixed body of knowledge, which then becomes ideology. If biogenesis is hypothesized as the law of Nature, and we observe that life comes from pre-existing life in all our experience, while the hypothesis of abiogenesis, that life comes from matter, is never backed by any observation, then according to the scientific method—which one is to be accepted as true scientific knowledge? Obviously, the one backed by empirical observation. It is necessary to get free of ideological “knowledge,” and return to science as a method for gathering evidence that may lead to conclusions beyond the material naturalist view of Nature, and conforms to what we experience and rationally understand about the world in which we live.

The objective here will be to take the subject (ego) and object (thing) that are held fixed, separate and in opposition to each other by the understanding and explicitly show them to be dialectically related in the dynamical movement of thinking. The dialectical movement of thought was explained by example in the propositional statement, S is P. The movement of the unified Concept as a whole, in which the fixed subject and object are considered as mere moments, constitutes the basic underlying dynamic truth or reality. And the totality of the movements and moments in this dialectical relationship constitute the self-determining Concept. The thinking is involved in this dynamic movement of the Concept is called conceptual thinking. It is left to us to demonstrate that this thinking belongs to the Concept and not to the ego. We can understand this intuitively at this point by realizing that in the dialectical relationship of the propositional form, S is P, the object becomes as fluid and active as the subject or ego. Therefore it is not a mere egoic activity.

In Sense-certainty, the being of the particular object of sense was found to belong to the universality - of consciousness. This relationship between the universal truth of the object and its sensuous determinate particularity is called the Thing of Perception, basically a Thing and its perceived properties. However, in perception it was concluded that the particular Thing is ultimately resolved into the unconditioned universality of the Understanding. Thus in both Sense-certainty and Perception the particular object or Thing proves to be essentially universality. It is important to recollect the development that has taken place up to this point, i.e., the various moments and movements of thinking that constitute the activity, or dynamic essence, of what is called, in totality, consciousness or knowing. The full explication of what consciousness is in its completely developed form has not yet been reached, but only what may broadly be referred to as the first three stages (Sense-certainty, Perception, Understanding) in the complete activity that will be necessary and sufficient to adequately comprehend consciousness. When the movement of consciousness is completed, the development will continue onward to the stages of Self-consciousness, Reason, and Spirit.

Progress in philosophy means to understand and accept one point and from there go on to develop the next. The whole is made up of many parts just as a building is composed of many floors – we cannot take out one or more of the beginning floors and expect that the building can thereby be erected. The overall system of Hegel’s philosophy requires an understanding of each of the parts within it, especially the beginning steps. In the earlier articles on this subject the essential point has been made that the subjective and objective aspects of reality cannot be understood separately from each other. There is no meaning to concept without that of which it is the concept, as much as there is no meaning to an object without a subject. With that basic and simple principle of the “distinct but inseparable” notion of the two, further progress was made to the details of the relationship between subject and object. The subject-predicate proposition was introduced to show how thinking takes on a dialectical nature and described this dialectical unity as being the first basic form in understanding the Concept as a dynamic unity of subject and object. Further determinations lay hidden in this structure which have not yet been made explicit for understanding. Only some general ideas or an outline for a basic understanding of what the basic principles are has been presented thus far. A more detailed comprehension is required to go further. The experiences that consciousness goes through in its development in learning about itself display the entire system of the truth of consciousness or the realm of spirit. These are not mere abstract thoughts but appear in relation to consciousness as actual shapes or stages of itself. The development of these determinate moments constitutes consciousness as a whole in its true existence. At that point in the developement of consciousness when it is no longer burdened with itself as that which appears to exist merely for it and as an other, its alien nature is overcome and appearance becomes identical to its own essence. This marks the entrance to the platform of the genuine science of spirit in which consciousness grasps its own essence or is absolute knowing.

Descartes laid the philosophical groundwork for the modern scientific period by separating subjective cognition from objective bodies, thereby also dividing epistemology from ontology reducing knowing to indifferent “observation.” This is the perspective of consciousness and its object, of which material science only imperfectly studies the object. In reality these two are not separated but dialectically related and sublated in the higher comprehending original unity of self-consciousness. Physical scientists fail to study these higher categories of reality and are therefore left with an incomplete understanding of a mere superficial nature that is inadequate to comprehend the core truth. But scientific, rational inquiry will not stop until a comprehensive idea is reached that is coherent with the full range of our knowledge of life. That spectrum of knowledge is not circumscribed merely by chemistry, physics and mathematics. Thus Vedanta-sutra advises, that you will have to continue your search, athatho brahma jijnasa, until you reach brahma, the underlying spiritual source, janmady asy yatah, the fountainhead where all inquiry will reach its purpose. Then beyond knowledge Bhagavatam will guide us to the ultimate search – raso vai sah, the search for our highest fulfillment, sweetness and love.

"Living systems are cognitive systems, and living as a process is a process of cognition." -H.R. Maturana, The Biology of Cognition (1970/1980) Just as the cell has gradually come to be understood as a highly regulated and unctionally integrated whole, so too is the biosphere now recognized as a finely balanced ecological whole in which local disturbances can create world-wide climatic catastrophe. The oversimplified ideas of biology that characterized the field in its immature beginning led to the theories of a progressive cumulative development or evolution to explain the present state of Nature. However, today, a more mature understanding of biology has brought with it the realization that Nature can not be the product of a gradual development, based only on the reductionist principles of chemistry and physics. In an ideal situation, where there are no strong interactions with the environment, isolated and purified chemicals may react in a mechanically simple manner, but in a living organism there are no isolated molecules. Everything within the cell interacts with everything else. The constituents of a cell are produced by the cell as much as they produce the cell itself. As the German philosopher Immanuel Kant understood, the unique judgment that allows us to identify a living organism as distinct from non-living matter, is that a living organism is both the cause and effect of itself. Thus, the life of a cell, as much as the life of the biosphere, can only be properly understood as an integrated organic whole.

The work of harmonizing and integrating the various fields of knowledge is not left to the individual as much as it is already accomplished in and by the Complete Whole. Rather, the individual must become self-forgetful, which is achieved anyhow in the universalizing activity of science. And more than self-forgetful, the individual becomes a self-sacrificing or dedicating unit within the self-realizing Absolute. It is here that entrusting oneself to the intelligence and reason of the True, once it is scientifically realized, introduces us to the concept of the mercy of the Absolute. This can be understood only when the essential negativity that characterizes reality is comprehended along with the positivity that is normally associated with Being. "Thinking" is negative activity because it is a determining - literally a terminating or delimiting activity. It is what produces distinction and differentiation - particularity, within the universality of mere positive being.

The analytical understanding cannot deal with integral wholes and therefore cannot understand the soul or God. The material body is illusory in the sense that it cannot be understood in its true identity without knowing its relationship to God. Analyzing its composition in terms of separated molecules or neurons is also illusory. To understand how to go from an untrue or partially true part to its truth in the whole a method developed by Hegel called conceptual thinking is required. Reproduction is not merely concerned with individuals, it involves the genus or genus process. The universal that determines the species is not changed when particulars under the universal change, die, reproduce according to their “own kind” or species. Without connecting the individual organisms with their species we may wrongly think they can evolve into any species by chance. But this is not how individual and species are related to each other. The species determines how the individuals will appear and controls their reproduction, growth, and so on. They are not independent to become what they want by choice or by chance. Everyone calls themselves “I” so “I” is a universal, although each means only oneself. In the same way each organism is identified with its species, although we mean its own particular organism – for example, a dog and not canine in general. Thus the universal and particular cannot be separated from each other. Similarly individuals who identify only personal reason independent of universal Reason are misconceiving their true identity. At the same time universal and particular are related, they are not the same but a unity in difference. The universal by itself is as abstract as the particular by itself. At the same time their relation can only be comprehended within a higher unity, the higher Self or Supreme Individual.

Gregor Mendel (1822-1884) was the first to explain that certain 'traits' were inherited in plants from one generation to the next. These would later become known as genes. Frederich Miescher in 1869 analyzed a substance from the nucleus of cells, which he therefore called nuclein. Further study of nuclein revealed that it contained elements like hydrogen, oxygen, nitrogen and phosphorous, with a specific ratio of nitrogen to phosphorous. Then in 1878 Albrecht Kossel determined that nuclein contained nucleic acid, from which he isolated five nucleobases (nitrogen compounds now referred to by the letters C, G, A, T, U representing cytosine, guanine, adenine, thymine, and uracil). It was also discovered that ribose, a sugar was present in the nuclein compound. What Miescher had isolated from the cell nucleus was actually what would latter be identified as DNA (Deoxyribonucleic acid). C. H. Waddington (1905 - 1975) first proposed the term “epigenetics” in 1942 to describe the region between the gene and the whole organism (phenotype) [3]. Today, what is called the epigenome refers to all the chromosomal modifications, DNA modifications, chromatin protein modifications and their complexes. It is the epigenome that determines both the expression of the genes and their inheritance. R. A. Jorgenson reports [4], "Many of these modifications appear to be “programmable” and to be “read out” to influence chromosomal functions." Nobel laureate Barbara McClintock stated this revolutionary proposal more clearly in her Nobel lecture [5], “to determine the extent of knowledge the cell has of itself, and how it utilizes this knowledge in a ‘thoughtful’ manner when challenged.” In 1960 R. A. Brinks suggested that chromosomes possess a paragenetic function in addition to their genetic function [7]. The physical nature of the paragenetic function is characterized by the variety of forms or states of chromatin that can reside at any genetic locus. While the genetic function is stable, the paragenetic function is labile and programmable in ontogeny. It is this latter function that allows organisms to transfer informational macromolecules (RNA and proteins) in a systematic and regulated manner over what is known as the “RNA information superhighway.” Given this capacity, organisms may be able to store information at numerous genetic loci in the form of paragenetic chromatin states, which can be reprogrammed during ontogeny or environmental stress [8]. This reprogrammable system could operate over the whole organism as a storage device, allowing it to make informed ‘decisions' during growth and development, or in response to the environment. Such processing capacity could be considered a form of ‘intelligence,' which also could be passed on to future generations. The study of the flow of information within and between cells and organisms represents the cutting edge of modern biological research. While physical correlates of cognitive behavior in living organisms are being discovered, it does not spell reduction to such correlates. The electronic activity within the physical components of a radio, for example, may be minutely determined, but ultimately it is not merely the electrical activity that produces the intelligent speech that is heard. Only the intelligent person whose voice is being broadcast through the radio can explain that. Without the broadcaster, the radio would sit silently even though fully functional. An organism without its living agency also appears to be devoid of metabolic activity although all the chemical components are fully present. How to connect life to matter will be the ultimate challenge that has to be met. This will prove to be a philosophical problem we hope to address in the near future.

Ken Foldes and I agreed to present what we consider an important controversy concerning the actual interpretation of Hegelian philosophy as regards the nature of the relationship between Man and God. Ken wants to argue for the oneness of God and Man, with the unity and exclusive Being of God as the Absolute Truth, making all being other than God illusory. On the other hand, I want to show the simultaneous identity and difference of Man and God dynamically integrated as a variegated system that is chiefly characterized as pure negative activity, or self-thinking-thought, in which God and Man and the World each have a distinct yet harmonized relationship when considered in their negative or sublated significance with respect to God.

Niels Bohr gave us the model of the atom as having a central nucleus around which electrons were circulating in stable orbits. He also gave us the complementarity principle that states that the mutually exclusive wave and corpuscular nature of light were not merely contradictory but complementary descriptions. Field theory considers light as a continuous wave phenomenon with a wavelength and frequency, while quantum theory considers its corpuscular nature as a discrete packet of energy called a photon. Thus we actually have an opposition of a continuous-discontinuous description concerning the fundamental nature of light. In line with what we have been discussing about the nature of reality as having an intrinsic polar nature, we have yet another confirmation at even the atomic level of investigation. This harks back to Kant’s “Critique of Pure Reason” where in his second antinomy he tried to show that the continuous and discontinuous descriptions of the cosmos were both possible although they were mutually exclusive of each other. Kant tried to demonstrate that this was a limitation of the way we think about the world, i.e. a defect of reason since the world is obviously content to go on as a single reality regardless of how we understand it. But we are showing here that our understanding of the world does not have to be antagonistic to it if we understand it properly. For Kant, opposites merely exclude one another. We are claiming that not only do they exclude each other but also they depend upon each other for either to exist at all.

The original intention of my first article was to direct attention to the philosophical aspects of the theory of evolution. I think this is the most significant contribution we can make to this subject. Because we are dealing with Hegel’s Philosophy of Nature it may not be possible to deal with issues from a purely philosophical perspective since Nature necessarily implies that scientific evidences and arguments must be considered. Hegel’s philosophy and the rational necessity in the development of the Concept guided him at every step in his interpretation of the broader stokes of Nature. The scientific evidences and laws established by scientists certainly help to formulate and serve to test such conceptual development. But ultimately it is in the Concept that completeness and consistency must be maintained. As Hegel recognizes, "the forms of nature cannot be brought into an absolute system…" (§ 370 add.) I would like to see Hegel’s Philosophy of Nature given a chance. His opposition to evolution is not unfounded even though it may go against the majority view. In this endeavor to understand what he has presented we may find an alternative to the creationist and evolutionist arguments that will satisfy both.

There is a nested hierarchy of wholes that characterizes reality, and especially life. The most fundamental principle is that Reality in the Vedantic/Bhagavat conception is based on Personality, as mentioned in the very first aphorism of the Bhagavat Purana, “janmady asya yatho nvayat itaratas charteshu abhijnah svarat.” Here and in many other scriptures the foundation or origin of everything is centered upon the abhijna or cognizant (conscious) primordial Personality of Godhead. Modern science in the West has become centered on matter as the foundation of everything, and this is called materialism. But matter is impersonal. The question is: how can a person come from what is impersonal? We consider such an approach to be backward. Person cannot come from an impersonal material substratum. It is very difficult to conceive how a rock can give rise to a concept of rock. But it is quite natural to understand that a rock exists as a concept for a conscious person. So too can the concept of objectivity, concreteness and perception arise from a personal substratum, and historically, this has been demonstrated by the detailed philosophical study of these ideas by numerous philosophers.

Origin of life studies have presented one of the most serious challenges to the mechanistic conception that life can be explained scientifically as a mere product of chemistry and physics. Hypotheses about the origin of life can be divided into two categories: (1) biogenesis – life comes from life, and (2) abiogenesis – life comes from non-living matter. The theory of the spontaneous generation of life from inanimate matter had been held even by the ancient Greeks and by numerous scientists well into the 19th century. The theory of abiogenesis poses many problems for understanding the origin of life on Earth, and the appearance of life early in Earth’s history. Numerous chemical, mathematical and informational problems arise which make random mechanical processes of cellular formation and function unlikely. Fossil evidence contradicts a gradualist evolutionary mechanism of development of life, especially the well-known Cambrian explosion, in which highly developed metazoan species suddenly appear in the geological column without intermediate predecessors. But the physical conundrums that mechanistic theories of chemistry and physics face are only one side of the problem. Along with a rising chorus of philosophers, Thomas Nagel, an atheist philosopher, has protested that essential questions about the origin of life, and features such as mind, intelligence and morality are completely left unexplained by mechanistic evolutionary theories. In Mind and Cosmos: Why the Materialist Neo-Darwinian Conception of Nature Is Almost Certainly False, Nagel plainly lays out his argument that the modern materialist approach to life has conspicuously failed to explain something so integral to nature as mind or consciousness, thereby threatening to unravel the entire naturalistic world picture of biology, evolutionary theory and cosmology. [13] As an alternative he argues that at least natural teleological principles must be admitted to play a role in our view of science. He writes: “Each of our lives is a part of the lengthy process of the universe gradually waking up and becoming aware of itself.” The Vedantic view of the Absolute as sentient conceives of Bhagavan as the conscious and consequently personal source of the universe. This view holds that life is fundamental, and not merely coextensive with matter. It is thus consistent with the law of biogenesis which is scientifically established in agreement with empirical evidence. Life is the basis of Nature, not matter, and Nature is a system in which the different species are nodes or niches, each possessed of variety and adaptability. Evolution is of consciousness, not of the bodies of organisms. The sedimentary fossils are the result of catastrophic deposits, and are thus not indicative of gradual evolution which is concluded only on the questionable assumption of uniformitarianism.

Hegel clearly established himself against the concept of a Darwinian-type of evolution, i.e. evolution in the objective sense. We have to be mindful that for Hegel the Concept is the Reality of which Nature is the Appearance. So actual movement occurs in the Concept and is only reflected in Nature. For this reason we could not expect Hegel to ever agree with Darwin's theory. It is not that the evidence and theory were not existing during Hegel's time. He was well aware of the existence of this type of thinking throughout history up until his own time. His disagreement is not based upon religious considerations, or considerations of State or politics. It is based upon the Concept as he explains in the Philosophy of Nature. Just as one would not expect to be able to explain the movement of an image in a mirror on the basis of the molecules of the mirror, so too the apprearance of Spirit in Nature can never be decribed on the basis of purely natural considerations. Some indication of Spirit's nature can be found by empirical observation, and corroborated by the same. However, Nature, as thouroughly implicit Reason, i.e. as other than explicit Reason, has its moment of independence from Spirit, but it is not completely determined in that moment. Rather it is ultimately inseparable from Spirit (just as the North pole of a magnet is inseparable from its South pole), and certainly has no intrinsic movement independent of it.

Ordinary consciousness absorbed in natural life is unable on its own to go beyond its immediate existence. Only if it is somehow forced out of its complacency by something other than itself can it be raised beyond itself, such that this being torn from itself is its death — its negation. However, because consciousness is for itself its own Concept, it is immediately both Concept and object for itself. Thus its original immediacy (taken as object) is overcome or negated by its own self. In this way it goes beyond or transcends its own immediate limited being. Therefore, by positing the singular individual, consciousness also posits an other-worldly beyond, which it may intuit from a spatial perspective as if they were existing alongside each other. Of course consciousness is not spatial and therefore such a perspective fails to grasp its true notion. It is only when consciousness turns upon itself — suffers violence at its own hands, that the Concept of consciousness can grasp its own self and thereby establish its truth. The path by which this self-critique of consciousness is accomplished is the science of consciousness. Because it is accomplished by rational introspection and direct experience it is also called the phenomenology of consciousness.

All the central assumptions of the Modern Synthesis (Neo-Darwinism) have been disproven. [1, 2] An article with the title, "Rocking the foundations of molecular genetics,” appearing in the prestigious Proceedings of the National Academy of Sciences at the end of 2012 [3] would have not been possible a decade ago. Groundbreaking experimental evidence of epigenetic maternal inheritance over several generations was published in the same journal, throwing the whole foundation of 21st century molecular genetics into question. Neo-Darwinism attributed genetic change to random events, in which physiology was assumed to play little role. "The germ line was thought to be isolated from any influence by the rest of the organism and its response to the environment. [3] The fundamental concepts that constitute the foundations of contemporary systems biology include holism, emergentism, and robustness, compared to the concepts of reductionism, mechanism, and homeostasis, that form the foundations of molecular biology. [18] Holism is to be contrasted with reductionism which considers a system as merely composed of a sum of parts. Emergentism, the appearance of hierarchical levels of organization, is contrasted with mechanism of independent linear events. Robustness refers to the preservation of the functionality of a system to a certain degree despite external or internal changes, while homeostasis refers to maintaining the stability of the state of a system. The Vedantic view also proposes viewing life from the Organic Whole perspective, in which consciousness forms the supporting basis. The conscious agent is an important part of that view, but the absolute conception of a unifying center is not to be omitted if a proper conception is to be achieved.

The nature of the philosophical description of consciousness requires a mode of reflection that is different from ordinary understanding, including most of what transpires in the name of philosophy. Therefore, it will be helpful to review once again the basic development that has been covered thus far in previous articles. The consciousness of Understanding deals with the aspects or the “in-so-far-as” perspective of things. It does not deal with things in their contradictory wholeness. Rational consciousness, however, deals with wholes that are only abstractly divided for the sake of Understanding. It is the task of Reason to determine how to deal with wholes as wholes. Most importantly, is that comprehension of the whole, even when that is attained, puts the comprehending consciousness outside the whole that it is comprehending. This is therefore not the whole as it is in and for itself. The whole must include the consciousness comprehending it as well as everything else, and it must have its own being beyond any finite conception of it, and in fact produce the finite conception of itself. It is perhaps one of the most significant achievements of Hegelian philosophy to be able to reach this goal—Truth in and for itself and not only for consciousness. Another is that Hegel is able to expound a scientific system that deals with a substantial Reality that is essentially Subject, i.e. a Truth that is rationally conscious of itself—God. And finally within his system he is able to deal with all the problems of philosophy in a consistently methodical way that proves to be both necessary and complete. All of this is the product and development of Reason which is the integrating and differentiating substance of Reality that is essentially Subject— viz., the Absolute Reason of God.

The object of study is consciousness. The activity of consciousness is called knowing. The study of a subject may only begin with immediacy, because a beginning implies that there is no prior mediation, i.e. no explicit differences or determinations. Such a beginning is mere being — what immediately is. Being as such is pure generality. Since consciousness is not a physical object that appears before the eyes like a tree, it has to be treated as an object of thought or, as it is said, “before the mind’s eye.” When consciousness apprehends itself as an object, then the objective consciousness must be in the form of something immediate. Thus apprehension is in a purely receptive mode without intervention of explicit thinking or comprehension. So the first passive observation of immediate consciousness as an object reveals a consciousness that simply is. The knowing activity of this immediate consciousness is also immediate so that what it knows is immediate knowledge. Because of this immediacy (non-differentiation) there is no distinction made between consciousness and what it knows. A consciousness thus absorbed in the wealth of the world, i.e. in what it sees, hears, smells, touches and tastes, is sensuous consciousness or sense-certainty. The word ‘certainty’ implies immediate knowledge that something is. Thus sensuous certainty of something means that it is, and no further thought determination interrupts that immediate knowledge. “That” refers only to indeterminate being, whereas “what” refers to the determination of that being — these are two distinct indexicals. So here in sense-certainty only that is implied. Consciousness itself is just another immediate ‘this’ opposed to all the other immediate individual ‘thises’ that are encountered by the senses. This immediate consciousness is called “I.” Certainty is the connection between “I” and its object, but this connection or mediation is transparent (invisible) to or not known by sense-certainty in its immediacy.

To claim that there is a scientific Concept of knowledge may seem unfounded since it is only an assertion here at this point. We still have to demonstrate this claim. It will do no good to merely argue against the ideas of knowledge as instrument, etc. that may already be accepted since these are also unfounded assertions. What we will therefore actually do is to show that the Concept of knowledge is not a mere assertion like the others by turning knowledge against itself as an assertion. An assertion may be considered what is merely given to us, and what is given to us may also be considered to be what appears or manifests. In this sense we will be considering knowledge as it appears or in its phenomenality, i.e. as it appears to natural consciousness, and work through knowledge or knowing in this modality until we arrive at the proper Concept of knowledge which gives us Truth in and for itself. This is what we would intuitively expect of knowledge so now we have to explicitly and scientifically show in what way knowledge and Truth can be understood to give this relation.

We may call this the problem of thought and being, where thought represents the subjective and being the objective component in this interactive event. In order to resolve this problem we have to look more carefully at the situation to make sure we understand what is going on more clearly. Let us take the example of "seeing" as something that may be easier to understand. Between (1) "seeing" and the (2) "thing seen" we may at first think we have two independent things. I have my subjective seeing capacity and there are objects in the world which are subject to my seeing capacity. Are these two really independent? Does it make any sense to speak of "things seen" unless the "seeing" capacity is already operating on them? Can we talk of an experience in such a way that what was experienced is different from the experience of it? We mean them to be different, their difference is not being denied. But are they independent or separable from one another? Whether we consider knowing, thinking, or whatever subjective activity we may come up with, it cannot be separated from the objective element that it is operating on. This interdependence of subjective and objective elements is crucial. Basically it is a situation where we have distinct elements inseparably connected to one another. This is not an extraordinary situation. It is rather most commonplace when we think about it. The sunshine is different from the Sun. No one would argue that when the Sun is shining in your room that the Sun is in your room. Distinct they are, but it would not be possible to separate the sunshine from the Sun and still have it be what we call the Sun. The point we are making is that Reality is not simply a matter of sensuous experience. Thought or conception is intimately tied up with our perception of Reality. As Kant explained, intuitions (perceptions) without conceptions are blind (indeterminate) and conceptions without intuitions are empty. Reality is a composite unity of both.

The neo-Darwinian theory of genetic random mutation and Natural Selection, does nothing to explain speciation. Thus, what has been called "natural selection" has come under much scrutiny and critique in recent times. The problem is that natural selection requires the existence of a stable array of species from which selection can be made. So natural selection does not perform the speciation, only the selection after speciation has occurred. The activity of creating new species must therefore lie in the random mutations of the genome. But this raises the problem that such mutations are generally always fatal to the organism, plus a whole host of other problems that modern advances in molecular biology have revealed about the detailed mechanisms occurring in DNA replication processes, including such things as intrinsic error correcting mechanisms during DNA transcription. Thus a theory of how species arise (speciation) does not currently exist in biology. The Vedantic/Bhagavat paradigm rejects the objectivist theory of evolution as not only wrong but an impediment to the actual scientific comprehension of Nature. The Vedantic conception of Life is a fully differentiated/determinate one that displays its variety in and as an dynamic organic whole. The crucial element of interdependence that is missing in modern theories of insular organism life is fully embraced in what we may call the Post-Darwinian, post-reductionist, post-modern conception of Life the Vedantic/Bhagavat conception offers.