•  73
    24 electron cluster formulas as the ‘molecular’ units of ideal metallic glasses
    with L. J. Luo, H. Chen, J. B. Qiang, Q. Wang, C. Dong, and P. Häussler
    Philosophical Magazine 94 (22): 2520-2540. 2014.
  •  88
    Microstructural characterization of rapidly solidified Al 90 Ce 10 alloy
    with Z. Zhang and X. Bian
    Philosophical Magazine 83 (7): 827-838. 2003.
    In the present work, the microstructure of the melt-spun Al 90 Ce 10 alloy has been characterized using X-ray diffraction and transmission electron microscopy together with energy-dispersive spectrometry. It has been found that the microstructure of the melt-spun Al 90 Ce 10 alloy is composed of the amorphous phase, f -Al, f -Al 11 Ce 3 , Al 3 Ce and unidentified phases, quite different from that of the ingot-like alloy consisting of coarse primary f -Al- f -Al 11 Ce 3 dendrites embedded in the …Read more
  •  85
    Strain-induced preferential dissolution at the dislocation emergences in MnS: an atomic scale study
    with Y. T. Zhou, S. J. Zheng, B. Zhang, and X. L. Ma
    Philosophical Magazine 95 (22): 2365-2375. 2015.
  •  18
    Family Social Capital and Sustainable Well-Being: Navigating Chinese Adolescents’ Well-Being During COVID-19 Lockdown
    with M. Jiang, K. J. Bartholomew, P. Edirisingha, Q. Liu, T. Jin, M. Chen, and K. Russell
    British Journal of Educational Studies 74 (1): 77-100. 2026.
    The COVID-19 pandemic caused widespread disruption as governments took actions to limit the spread of the virus. Measures such as physical distancing and lockdowns changed living conditions, leading to challenges such as social isolation and reduced connectedness. This study explores COVID-19’s impact on adolescents’ well-being, emphasising family social capital, which refers to supportive adult-child relationships that foster well-being and enhance remote learning. Quantitative data was collect…Read more
  •  82
    The evolution of polarization inside ultrathin PbTiO3films: a theoretical study
    with Y. B. Xue, D. Chen, Y. L. Tang, Y. L. Zhu, and X. L. Ma
    Philosophical Magazine 95 (19): 2067-2077. 2015.
  •  131
    Fluence-dependent radiation damage in helium ion-irradiated Cu/V multilayers
    with E. G. Fu, H. Wang, J. Carter, Lin Shao, and X. Zhang
    Philosophical Magazine 93 (8): 883-898. 2013.
  •  103
    Microstructures of a single-crystal nickel-base superalloy after thermo-mechanical fatigue
    with S. X. Li †, L. Zhou, S. H. Ai, F. Liu, H. Zhang, and Z. G. Wang
    Philosophical Magazine 84 (31): 3335-3351. 2004.
  •  83
    Indications of bulk property changes from surface ion implantation
    with B. Yang, N. Can, and P. D. Townsend
    Philosophical Magazine 91 (2): 250-262. 2011.
  •  21
    Scoping Culture and Heritage Capital Report
    with Patrycja Kaszynska, Diane Coyle, Emma Dwyer, Ricky Lawton, Patrizia Riganti, Sadie Watson, and Mafalda Dâmaso
    The Scoping Culture and Heritage Capital study was commissioned jointly in November 2021 by the Arts and Humanities Research Council (AHRC) and Department for Digital, Culture, Media and Sport (DCMS). The study was led by Dr Patrycja Kaszynska, Senior Research Fellow at UAL, in partnership with cultural sector partners and policy makers, and collaborating with a team of researchers spanning arts and humanities, heritage science and economics: Dr Sadie Watson and Dr Emma Dwyer from Museum of Lond…Read more
  •  89
    A link prediction model for weighted networks based on Dempster–Shafer evidence theory and the influence of common neighbours is proposed in this paper. First, three types of future common neighbours and their topological structures are proposed. Second, the concepts of endpoint weight influence, link weight influence, and high-strength node influence are introduced. Then, the similarity based on the impacts of current common neighbours and FCNs is defined, respectively. Finally, the two similar…Read more
  •  7514
    CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis
    with Oliver He, John Beverley, Gilbert S. Omenn, Barry Smith, Brian Athey, Luonan Chen, Xiaolin Yang, Junguk Hur, Hsin-hui Huang, Anthony Huffman, Yingtong Liu, Edison Ong, and Hong Yu
    Scientific Data 181 (7): 5. 2020.
    Ontologies, as the term is used in informatics, are structured vocabularies comprised of human- and computer-interpretable terms and relations that represent entities and relationships. Within informatics fields, ontologies play an important role in knowledge and data standardization, representation, integra- tion, sharing and analysis. They have also become a foundation of artificial intelligence (AI) research. In what follows, we outline the Coronavirus Infectious Disease Ontology (CIDO), w…Read more
  •  1160
    A new framework for host-pathogen interaction research
    with Hong Yu, Li Li, Anthony Huffman, John Beverley, Junguk Hur, Eric Merrell, Hsin-hui Huang, Yingtong Liu, Edison Ong, Liang Cheng, Tao Zeng, Jingsong Zhang, Pengpai Li, Zhiping Liu, Zhigang Wang, Xiangyan Zhang, Xianwei Ye, Samuel K. Handelman, Jonathan Sexton, Kathryn Eaton, Gerry Higgins, Gilbert S. Omenn, Brian Athey, Barry Smith, Luonan Chen, and Yongqun He
    Frontiers in Immunology 13. 2022.
    COVID-19 often manifests with different outcomes in different patients, highlighting the complexity of the host-pathogen interactions involved in manifestations of the disease at the molecular and cellular levels. In this paper, we propose a set of postulates and a framework for systematically understanding complex molecular host-pathogen interaction networks. Specifically, we first propose four host-pathogen interaction (HPI) postulates as the basis for understanding molecular and cellular host…Read more
  •  1061
    CIDO: The Community-Based Coronavirus Infectious Disease Ontology
    with Yongqun He, Hong Yu, Edison Ong, Yingtong Liu, Anthony Huffman, Hsin-hui Huang, Beverley John, Asiyah Yu Lin, Duncan William D., Sivaram Arabandi, Jiangan Xie, Junguk Hur, Xiaolin Yang, Luonan Chen, Gilbert S. Omenn, Brian Athey, and Barry Smith
    Proceedings of the 11Th International Conference on Biomedical Ontologies (Icbo) and 10Th Workshop on Ontologies and Data in Life Sciences (Odls). 2021.
    Current COVID-19 pandemic and previous SARS/MERS outbreaks have caused a series of major crises to global public health. We must integrate the large and exponentially growing amount of heterogeneous coronavirus data to better understand coronaviruses and associated disease mechanisms, in the interest of developing effective and safe vaccines and drugs. Ontologies have emerged to play an important role in standard knowledge and data representation, integration, sharing, and analysis. We have init…Read more
  •  1596
    A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology
    with Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale, John Beverley, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Philip Huang, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng, Anna Maria Masci, Liwei Wang, Hongfang Liu, Fatima Zohra Smaili, Robert Hoehndorf, Zoë May Pendlington, Paola Roncaglia, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur, Gilbert S. Omenn, Brian Athey, and Barry Smith
    Journal of Biomedical Semantics 13 (1): 25. 2022.
    The current COVID-19 pandemic and the previous SARS/MERS outbreaks of 2003 and 2012 have resulted in a series of major global public health crises. We argue that in the interest of developing effective and safe vaccines and drugs and to better understand coronaviruses and associated disease mechenisms it is necessary to integrate the large and exponentially growing body of heterogeneous coronavirus data. Ontologies play an important role in standard-based knowledge and data representation, integ…Read more
  •  28
    Confucian thought provides guidance on social structure and political governance. It was introduced to Japan as early as the fourth century AD (Anno Domini) and has been deeply imprinted in Japan’s history and culture for thousands of years. This article takes I am a cat as a specific example to analyze the specific Confucian ideas reflected in Japanese relational language. I am a cat is a classic work by the famous modern Japanese satirist Soseki Natsume. From the specific reflection of I am a …Read more
  •  16
    Visualizing the mechanical activation of Src
    with E. L. Botvinick, Y. Zhao, M. W. Berns, S. Usami, R. Y. Tsien, and S. Chien
    The mechanical environment crucially influences many cell functions 1. However, it remains largely mysterious how mechanical stimuli are transmitted into biochemical signals. Src is known to regulate the integrin-cytoskeleton interaction2, which is essential for the transduction of mechanical stimuli3-5. Using fluorescent resonance energy transfer, here we develop a genetically encoded Src reporter that enables the imaging and quantification of spatio-temporal activation of Src in live cells. We…Read more
  •  19
    Molecular architecture of contactin-Associated protein-like 2 and its interaction with contactin 2
    with Z. Lu, Mvvvs Reddy, J. Liu, A. Kalichava, L. Zhang, F. Chen, L. M. F. Holthauzen, M. A. White, S. Seshadrinathan, X. Zhong, G. Ren, and G. Rudenko
    Contactin-Associated protein-like 2 is a large multidomain neuronal adhesion molecule implicated in a number of neurological disorders, including epilepsy, schizophrenia, autism spectrum disorder, intellectual disability, and language delay. We reveal here by electron microscopy that the architecture of CNTNAP2 is composed of a large, medium, and small lobe that flex with respect to each other. Using epitope labeling and fragments, we assign the F58C, L1, and L2 domains to the large lobe, the FB…Read more
  •  20
    Analysis of gene expression patterns in gastric cancer can help to identify a comprehensive panel of gene biomarkers for predicting clinical outcomes and to discover potential new therapeutic targets. Here, a multi-step bioinformatics analytic approach was developed to establish a novel prognostic scoring system for GC. We first identified 276 genes that were robustly differentially expressed between normal and GC tissues, of which, 249 were found to be significantly associated with overall surv…Read more
  •  25
    Background: PPM1G is a nuclear localized serine/threonine phosphatase implicated to be a regulator of chromatin remodeling, mRNA splicing, and DNA damage. However, its in vivo function is unknown. Results: Here we show that ppm1g expression is highly enriched in the central nervous system during mouse and zebrafish development. ppm1g-/- mice were embryonic lethal with incomplete penetrance after E12.5. Rostral defects, including neural tube and craniofacial defects were observed in ppm1g-/- embr…Read more
  •  31
    Using the ER-fMRI technique, the present study was designed to investigate the neural substrates of language switching among second-language learners. Twelve Chinese college students who were learning English were scanned when they performed language switching tasks. Compared to non-switching conditions, language switching elicited greater activation in the right superior prefrontal cortex, left middle and superior frontal cortex, and right middle cingulum and caudate. When the direction of swit…Read more
  •  16
    Mapping abnormal subcortical brain morphometry in an elderly HIV+ cohort
    with Wade Bsc, Vg Valcour, L. Wendelken-Riegelhaupt, P. Esmaeili-Firidouni, sh JoShi, and Pm Thompson
    © 2015 IEEE. Over 50% of HIV+ individuals exhibit neurocognitive impairment and subcortical atrophy, but the pattern of brain abnormalities associated with HIV is still poorly understood. Using parametric surface-based shape analyses, we mapped the 3D profile of subcortical morphometry in 63 HIV+ participants and 31 uninfected controls. The thalamus, corpus striatum, hippocampus, amygdala, brainstem, callosum and ventricles were segmented from brain MRIs. To investigate subcortical shape, we ana…Read more
  •  9
    Background: Malaria around the China-Myanmar border is a serious health problem in the countries of South-East Asia. An. minimus is a principle malaria vector with a wide geographic distribution in this area. Malaria is endemic along the boundary between Yunnan province in China and the Kachin State of Myanmar where the local Anopheles community and the malaria transmission vectors have never been clarified. Methods. Adult Anopheles specimens were collected using CDC light traps in four villages…Read more
  •  44
    Foundations of Generative AI
    with Ken Huang and Xiaochen Zhang
    In Ken Huang, Yang Wang, Ben Goertzel, Yale Li, Sean Wright & Jyoti Ponnapalli (eds.), Generative AI Security: Theories and Practices, Springer Nature Switzerland. pp. 3-30. 2024.
    This chapter offers an introduction to the field of Generative AI (GenAI), providing critical foundational knowledge on neural networks, deep learning, advanced architectures, and recent innovations propelling this domain. It delineates GenAI as a branch of AI focused on creating novel, coherent content, distinguishing it from discriminative models. Tracing the origins of GenAI, the chapter elucidates the concepts of neural networks, unraveling their components like input layers, hidden layers, …Read more
  •  79
    Generative AI Security: Theories and Practices (edited book)
    with Ken Huang, Ben Goertzel, Yale Li, Sean Wright, and Jyoti Ponnapalli
    Springer Nature Switzerland. 2024.
    This book explores the revolutionary intersection of Generative AI (GenAI) and cybersecurity. It presents a comprehensive guide that intertwines theories and practices, aiming to equip cybersecurity professionals, CISOs, AI researchers, developers, architects and college students with an understanding of GenAI’s profound impacts on cybersecurity. The scope of the book ranges from the foundations of GenAI, including underlying principles, advanced architectures, and cutting-edge research, to spec…Read more
  •  41
    Space-Focused Stereotypes About People Living With HIV/AIDS and the Effects on Community-Approaching Willingness
    with Fangfang Wen, Bin Zuo, Jian Yang, Yalan Qiao, Hanxue Ye, and Zengqi Luo
    Frontiers in Psychology 13. 2022.
    Targeting people living with Human Immunodeficiency Virus, this research examined the prevalence of space-focused stereotypes and their underlying mechanism on behavioral inclinations. Study 1 adopted the explicit nomination and implicit Go/No-Go association tests to explore the existence of space-focused stereotypes of people living with HIV/AIDS. The results demonstrated that space-focused stereotypes were only manifested explicitly with characteristics such as messy, dirty, and gloomy. Study …Read more
  •  52
    Bayesian feature interaction selection for factorization machines
    with Yifan Chen, Pengjie Ren, Meng Wang, and Maarten de Rijke
    Artificial Intelligence 302 (C): 103589. 2022.
  •  120
    Atomic structure of the Fe/Fe3C interface with the Isaichev orientation in pearlite
    with Y. T. Zhou, S. J. Zheng, Y. X. Jiang, T. Z. Zhao, and X. L. Ma
    Philosophical Magazine 1-12. forthcoming.